Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   VOI49_RS04285 Genome accession   NZ_CP142018
Coordinates   829541..831313 (+) Length   590 a.a.
NCBI ID   WP_003050294.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain lu24     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 824541..836313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI49_RS04270 - 824606..825814 (+) 1209 WP_003050286.1 CCA tRNA nucleotidyltransferase -
  VOI49_RS04275 - 825811..827688 (+) 1878 WP_003050288.1 ABC-F family ATP-binding cassette domain-containing protein -
  VOI49_RS04280 rcrP 827796..829541 (+) 1746 WP_324739556.1 ABC transporter ATP-binding protein Regulator
  VOI49_RS04285 rcrQ 829541..831313 (+) 1773 WP_003050294.1 ABC transporter ATP-binding protein Regulator
  VOI49_RS04290 gdhA 831570..832919 (+) 1350 WP_003050296.1 NADP-specific glutamate dehydrogenase -
  VOI49_RS04295 - 833044..833454 (+) 411 WP_003050301.1 peptide deformylase -
  VOI49_RS04300 - 833642..835666 (-) 2025 WP_003050305.1 surface-anchored 5'-nucleotidase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 65894.33 Da        Isoelectric Point: 5.6145

>NTDB_id=839182 VOI49_RS04285 WP_003050294.1 829541..831313(+) (rcrQ) [Streptococcus dysgalactiae strain lu24]
MAEQHVFKRVWTYLSAYRGLIFLAVFLKIISAVMSVLEPFVLGLVITELSSNLLDMAKGIEGAGINTSYIAFLLLVYFIR
ALCYEIGAYGSNYVMTKAVQSTIRDLRQALSQKINRIPVSYFDQHQFGDMLGRFTSDVETVSNALQQSFLQIVNAFLTIF
LVMGMVLYLNLTLALIVIVAIPIIYAASQFILKKSQPYFKEQAKVLGEMNGFVQENLSGFNVLKLYGREEASEQAFHQIT
EHLQDVGFKASFLSGIMMPVLHFISDSVYMIVALVAGLQVMAGQLTIGNMQAFVQYIWQISQPIQTITQLAGLLQSAKSS
LERIFAVLDEADDAMLVTDQLDEDLTGQVSFNHVDFSYQADKPLIKEFTLDVNPGEMIAIVGPTGAGKTTLINLLMRFYD
VNKGSITVDGHDIRDLSRQSYRRQFGMVLQDAWLYEGTIQDNLRFGNLEASDEAIVEAAKAANVDHFIRTLPGGYHMVMN
QESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHDSLLAAQGFYFDLYHSQFKSSQP

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=839182 VOI49_RS04285 WP_003050294.1 829541..831313(+) (rcrQ) [Streptococcus dysgalactiae strain lu24]
ATGGCAGAGCAACATGTTTTTAAGCGGGTGTGGACCTATTTAAGCGCCTACCGTGGCTTAATCTTTTTAGCAGTTTTCCT
TAAAATTATCAGTGCTGTCATGAGTGTCTTGGAACCCTTTGTGCTTGGTTTAGTCATTACAGAATTGTCATCTAATCTTC
TTGATATGGCTAAGGGGATTGAAGGCGCAGGGATTAATACCTCTTATATTGCTTTTTTACTGCTTGTCTATTTTATTCGT
GCATTATGTTATGAAATCGGAGCCTACGGGTCAAATTATGTCATGACCAAGGCTGTTCAATCGACTATTCGTGATTTGAG
ACAGGCCTTGAGTCAAAAAATTAATCGTATTCCTGTCTCTTATTTTGACCAACACCAGTTTGGGGATATGCTAGGACGCT
TCACCTCAGATGTTGAGACAGTGTCAAATGCTTTGCAACAGTCTTTCTTGCAGATTGTCAATGCCTTTCTCACCATTTTT
CTCGTGATGGGAATGGTCTTGTACCTCAATCTGACACTAGCTTTGATTGTGATTGTTGCTATTCCTATTATCTATGCTGC
ATCTCAATTCATTTTAAAAAAATCACAACCTTATTTTAAAGAGCAAGCTAAGGTGTTAGGAGAGATGAATGGTTTTGTTC
AGGAAAATCTATCGGGTTTTAACGTCTTAAAACTTTACGGCCGCGAAGAAGCCTCAGAGCAAGCCTTCCATCAGATTACT
GAACACTTGCAAGATGTTGGGTTTAAGGCAAGCTTTTTATCCGGTATTATGATGCCTGTTTTGCATTTTATTTCTGATTC
TGTCTATATGATCGTTGCTTTGGTCGCAGGCCTGCAAGTTATGGCAGGACAATTGACCATTGGGAATATGCAAGCTTTTG
TTCAATATATTTGGCAAATCAGTCAGCCAATTCAAACCATTACCCAGTTAGCAGGTTTATTACAGAGTGCTAAATCATCC
TTAGAACGTATTTTTGCGGTTCTGGATGAGGCGGATGATGCCATGCTTGTGACAGATCAACTGGATGAGGATTTAACAGG
TCAAGTCTCATTTAACCATGTGGATTTTTCCTATCAGGCTGATAAACCTTTGATCAAAGAGTTTACACTTGATGTTAACC
CCGGTGAGATGATTGCGATTGTAGGACCAACTGGAGCTGGGAAAACGACTCTCATTAACCTCTTGATGCGTTTTTATGAT
GTGAATAAAGGATCCATTACTGTTGATGGGCATGATATTCGTGACCTGTCACGTCAATCCTATCGTCGCCAATTTGGTAT
GGTCCTACAAGATGCTTGGCTTTATGAAGGGACAATCCAAGATAACCTTCGCTTTGGGAACCTTGAAGCCAGCGATGAGG
CTATTGTAGAAGCAGCCAAAGCTGCCAATGTAGATCATTTTATCAGAACCTTGCCAGGTGGGTACCACATGGTGATGAAC
CAAGAATCTAGTAATATTTCCTTAGGTCAAAAACAACTTTTAACCATTGCAAGGGCCTTGTTGGCTGATCCTAAAATTCT
GATTTTAGATGAAGCGACCTCTTCGGTAGATACTCGGCTAGAATTATTGATTCAAAAGGCGATGAAGCGGTTAATGAAAG
GACGAACAAGCTTTGTGATCGCTCACCGTCTGTCTACAATTCAAGAAGCTGATAAGATTCTAGTATTAAAAGATGGTCAG
ATCATTGAACAAGGGAACCATGACAGTTTACTGGCTGCTCAAGGTTTCTATTTTGATCTCTATCATAGTCAATTTAAATC
CAGTCAACCCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(366-514)

ABC transporter transmembrane region (ABC_membrane)

(21-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.463

99.831

0.434