Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   VOI49_RS04280 Genome accession   NZ_CP142018
Coordinates   827796..829541 (+) Length   581 a.a.
NCBI ID   WP_324739556.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain lu24     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 822796..834541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI49_RS04260 - 823258..823638 (+) 381 WP_003050280.1 DUF1149 family protein -
  VOI49_RS04265 - 823638..824486 (+) 849 WP_003050283.1 DegV family protein -
  VOI49_RS04270 - 824606..825814 (+) 1209 WP_003050286.1 CCA tRNA nucleotidyltransferase -
  VOI49_RS04275 - 825811..827688 (+) 1878 WP_003050288.1 ABC-F family ATP-binding cassette domain-containing protein -
  VOI49_RS04280 rcrP 827796..829541 (+) 1746 WP_324739556.1 ABC transporter ATP-binding protein Regulator
  VOI49_RS04285 rcrQ 829541..831313 (+) 1773 WP_003050294.1 ABC transporter ATP-binding protein Regulator
  VOI49_RS04290 gdhA 831570..832919 (+) 1350 WP_003050296.1 NADP-specific glutamate dehydrogenase -
  VOI49_RS04295 - 833044..833454 (+) 411 WP_003050301.1 peptide deformylase -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 65165.76 Da        Isoelectric Point: 5.7754

>NTDB_id=839181 VOI49_RS04280 WP_324739556.1 827796..829541(+) (rcrP) [Streptococcus dysgalactiae strain lu24]
MGLIWSYLSSKPKWLALDILGGLLFVLVNLGLPTILARMIDHGIMQQDTEALYGWTLVMFVIIVLGALGRIILSYASGKL
TTTMIKELRNDMYRQLQDYSHTEYEKIGVASLVTRMTSDAFVLMQFAEISLRLGVVTPLMMIFSVLMIFLTSPSLAWIVA
VSMPFLVLVVVYVAVKTRPLSEKQQESLDHINQLVRENLTGLRVIRAFSREAFQQERFDERNQEYASISKRLFTLTGLTE
PLFVQIIIAMIVAIVWFALDPLAKGQIQIGDLVAFIEYSFHALFSFLMFANLFTMYPKMAVSSKRIKEVMDMPISISKNE
DGVTETLTKGYLEFDNVTFAYPGETESPVLHNISFKTKPGETIAFIGSTGSGKSSLVNLIPRFYDVTFGRILVDGVDVRD
YQLKSLRAKIGFIPQKALLFTGTIEDNLKYGKADASYWELDEATDVSQARAFIASREKGYQTHLAEAGSNLSGGQKQRLS
IARAVVKKPDIYIFDDSFSALDYQTDAALRKRLKEVTEDATVLIVAQRVGTIMDADQIIVLDQGEIVGRGKHEELMATNA
IYREIADSQLNKGNLMEKEVD

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=839181 VOI49_RS04280 WP_324739556.1 827796..829541(+) (rcrP) [Streptococcus dysgalactiae strain lu24]
ATGGGGCTGATTTGGTCGTATTTATCATCAAAGCCTAAGTGGTTGGCTTTGGACATTTTAGGTGGCCTATTATTTGTCCT
GGTTAATTTAGGATTACCCACTATTTTAGCTCGAATGATAGACCATGGAATCATGCAGCAGGATACCGAAGCCTTATATG
GCTGGACGTTGGTCATGTTTGTCATTATTGTGTTAGGTGCTCTTGGTCGAATTATCTTATCCTACGCATCTGGTAAGCTA
ACGACAACCATGATCAAGGAGTTGCGCAATGACATGTATCGTCAGTTGCAGGATTACTCTCATACAGAATATGAAAAAAT
TGGGGTTGCTTCTTTGGTTACCCGAATGACAAGTGATGCCTTTGTGCTCATGCAGTTTGCTGAAATATCTTTACGATTAG
GAGTAGTGACGCCCTTAATGATGATTTTTTCAGTGCTGATGATTTTCTTGACAAGTCCATCGTTAGCATGGATTGTAGCG
GTATCCATGCCTTTTTTGGTGCTGGTTGTTGTTTATGTCGCCGTCAAAACAAGGCCTCTCTCTGAAAAACAACAAGAAAG
TTTAGACCACATTAATCAGTTAGTCAGAGAAAATTTGACTGGCTTGCGCGTGATTAGAGCCTTTTCGAGAGAAGCGTTTC
AGCAGGAACGTTTTGATGAGCGTAATCAAGAATACGCCAGTATTTCTAAACGTCTCTTCACCCTAACAGGATTGACAGAA
CCGCTATTTGTGCAAATCATTATTGCCATGATTGTAGCCATTGTTTGGTTTGCCTTAGACCCTTTGGCTAAGGGACAAAT
TCAAATTGGGGATTTGGTAGCCTTTATCGAGTATAGTTTTCATGCTCTTTTTTCGTTTTTGATGTTTGCTAATCTCTTTA
CCATGTATCCTAAAATGGCAGTTTCCAGCAAACGGATCAAAGAAGTCATGGACATGCCAATCTCTATTTCTAAAAATGAA
GATGGGGTAACAGAGACCTTGACAAAAGGTTACCTCGAATTTGACAATGTCACCTTTGCCTATCCTGGAGAAACAGAAAG
TCCTGTTCTACATAACATTTCTTTTAAAACCAAGCCTGGTGAAACCATCGCTTTTATTGGCTCAACAGGGTCAGGAAAAT
CATCCTTGGTGAATTTAATTCCTCGATTTTACGACGTGACGTTTGGGAGAATCTTGGTCGATGGGGTAGATGTCAGAGAT
TATCAGTTAAAATCTCTTCGTGCTAAAATTGGTTTCATCCCACAGAAAGCTCTGCTATTTACAGGAACTATCGAAGACAA
TTTAAAATATGGTAAGGCAGATGCTAGCTATTGGGAATTAGATGAAGCTACGGATGTATCTCAAGCTAGAGCATTTATTG
CTAGCCGCGAAAAAGGCTATCAGACCCATCTAGCAGAAGCAGGAAGCAATTTATCAGGTGGTCAGAAGCAACGGCTATCC
ATTGCCCGTGCGGTTGTTAAAAAACCCGATATTTATATCTTCGATGATTCTTTTTCGGCACTAGATTACCAAACCGATGC
TGCTTTAAGGAAGCGCCTGAAAGAAGTAACAGAGGATGCGACTGTTTTGATTGTAGCTCAACGGGTTGGGACTATCATGG
ATGCCGATCAAATCATTGTTCTAGATCAAGGTGAAATTGTCGGTCGAGGCAAGCATGAGGAATTGATGGCAACCAATGCT
ATTTACCGTGAAATTGCTGATTCGCAATTAAACAAAGGAAATCTCATGGAAAAGGAGGTGGACTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(26-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.775

91.738

0.365