Detailed information NTG0839137

Bioinformatically predicted

Overview

• Name: uvrA
• Type: Machinery gene
• Locus tag: VIX88_RS12700
• Genome accession: NZ_CP142016
• Coordinates: 2553492..2556317 (-)
• Length: 941 a.a.
• NCBI ID: WP_064970960.1
• Uniprot ID: -
• Organism: Riemerella anatipestifer strain 59RAST107
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2548492..2561317

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VIX88_RS12685 (VIX88_12685)	-	2550184..2550567 (+)	384	WP_064970962.1	HU family DNA-binding protein	-
VIX88_RS12690 (VIX88_12690)	purH	2551350..2552864 (-)	1515	WP_109475004.1	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	-
VIX88_RS12695 (VIX88_12695)	-	2552884..2553468 (-)	585	WP_004918918.1	outer membrane beta-barrel protein	-
VIX88_RS12700 (VIX88_12700)	uvrA	2553492..2556317 (-)	2826	WP_064970960.1	excinuclease ABC subunit UvrA	Machinery gene
VIX88_RS12705 (VIX88_12705)	-	2556440..2557384 (-)	945	WP_064970959.1	SPFH domain-containing protein	-
VIX88_RS12710 (VIX88_12710)	-	2557432..2559213 (-)	1782	WP_064970958.1	AMP-dependent synthetase/ligase	-
VIX88_RS12715 (VIX88_12715)	-	2559338..2560477 (+)	1140	WP_064970957.1	acyl-CoA dehydrogenase	-

Sequence

Protein

• Length: 941 a.a.
• Molecular weight: 105495.29 Da
• Isoelectric Point: 7.8642

>NTDB_id=839137 VIX88_RS12700 WP_064970960.1 2553492..2556317(-) (uvrA) [Riemerella anatipestifer strain 59RAST107]
MMKNRDFIEVYGAREHNLKNIDVKIPRNELVVITGLSGSGKSSLAFDTIFAEGQRRYIETFSAYARQFLGGLERPDVDKI
EGLSPVIAIEQKTTNKNPRSTVGTVTELYDFLRLLFARVSTAYSLETGKKLQSYTEEQILETIKEQYQNEKVLLLAPLVK
ARKGHYHELFVQLAKKGYSQARIDGILQDIEYDLKLDRYKTHDIEVVIDRWIIGETASEARMQKSLSTALQMGDGVVMVQ
KYNSEEFQYFSKDLMDTATGQALPLPEPNTFSFNSPKGSCPHCKGLGTVKKINPDYLVTEPTLPFQSALLPLETYKFSKW
ALSQIKSILELFDLNLQTPFNKIPKEALDYIYYGCDKEFVKDLKHAGISKKTKINFEGLIPHLEKVIENKENYGATQVER
EFTVEEICTDCNGTRLKPESLAFKIEGKNIAEVNAMSLLDLKDWLSEIKNSFSEKNKIIAHEILKEIETRLGFLLDVGLE
YLSLSRSSKTLSGGESQRIRLATQIGSQLVNVLYILDEPSIGLHQRDNERLINSLKSLRDLGNSVLVVEHDKDMILEADE
VLDIGPKAGKYGGKVLWQGSPKDLIKADTITADYLTGRRKIEIPEKRREGNGNSIVLKGATGNNLKNVTLKIPLGKMVVV
TGISGSGKSSLINGTLYPILNRHFYRAVQEPLPYKKIEGIEHIDKIVDVDQTPIGRTPRSNPATYTGVFSDIRTLFANLP
ESKIRGYKAGRFSFNVKGGRCETCQGGGLKVIEMNFLPDVYVHCETCNGKRFNRETLEVRYKGKSISDVLDMTIDEAVEF
FQPIPKIYSKVKTLQEVGLGYITLGQQSTTLSGGEAQRVKLATELSKKQTGKTLYILDEPTTGLHFEDVKILMEVIQKLV
DLGNSFIIIEHNMDVIKLADHIIDVGPEGGKNGGSIVAEGTPEEIIKNKKSITGKFLKKEM

Nucleotide

• Length: 2826 bp

>NTDB_id=839137 VIX88_RS12700 WP_064970960.1 2553492..2556317(-) (uvrA) [Riemerella anatipestifer strain 59RAST107]
ATGATGAAAAATAGAGATTTCATAGAGGTCTATGGTGCTAGAGAGCATAACTTAAAAAACATTGATGTTAAAATTCCTCG
TAACGAGTTAGTCGTTATTACAGGGCTATCAGGAAGTGGGAAATCTTCTTTAGCATTTGATACTATTTTTGCAGAAGGAC
AAAGGCGTTATATAGAAACATTTTCTGCCTATGCTCGGCAGTTTCTAGGCGGATTAGAACGCCCCGATGTCGATAAAATA
GAAGGACTTTCACCTGTTATCGCCATTGAACAAAAAACCACTAATAAAAACCCTCGTTCTACCGTAGGGACGGTTACAGA
ACTTTATGATTTTCTCAGACTTCTATTTGCTAGGGTTTCCACGGCTTATTCCTTGGAAACAGGTAAAAAGCTACAAAGCT
ATACCGAAGAGCAAATTTTAGAAACCATCAAAGAACAATATCAGAATGAAAAAGTCTTACTTCTAGCACCGCTAGTAAAG
GCTAGAAAAGGGCATTATCATGAGCTGTTTGTACAATTAGCCAAAAAAGGATATTCCCAAGCAAGAATAGACGGCATTTT
ACAAGATATAGAATACGATCTTAAACTAGACCGATACAAAACTCATGATATAGAAGTAGTTATAGACCGTTGGATTATAG
GCGAAACTGCATCTGAAGCTAGAATGCAAAAATCACTTTCTACGGCTTTACAGATGGGTGACGGTGTAGTTATGGTTCAA
AAGTATAATTCGGAAGAGTTTCAGTATTTTTCTAAAGATTTAATGGATACCGCTACAGGACAGGCTTTACCATTACCAGA
ACCAAATACTTTTTCGTTCAATTCTCCTAAGGGAAGTTGTCCTCATTGTAAAGGTTTGGGGACGGTAAAAAAAATCAATC
CTGATTATCTGGTTACCGAGCCTACACTACCCTTCCAGTCGGCACTATTACCATTAGAAACTTATAAATTTAGTAAGTGG
GCTTTATCTCAAATTAAAAGCATTCTAGAATTGTTTGACCTTAACCTACAAACGCCATTTAACAAAATTCCTAAAGAAGC
TTTAGATTACATCTATTACGGCTGTGATAAAGAGTTTGTAAAAGATTTAAAACACGCTGGAATTTCCAAAAAGACTAAAA
TTAACTTTGAAGGGTTAATCCCTCATTTAGAAAAAGTTATAGAAAATAAGGAAAACTACGGTGCTACACAAGTGGAGCGA
GAATTTACTGTAGAAGAAATCTGCACTGACTGTAACGGAACAAGATTAAAACCCGAAAGTTTAGCCTTTAAAATAGAAGG
TAAGAATATAGCTGAAGTTAATGCTATGAGCCTATTAGACTTAAAGGATTGGCTTTCGGAAATAAAAAATAGTTTTAGTG
AAAAGAACAAAATTATCGCCCACGAAATTTTAAAAGAGATAGAAACTCGTTTGGGCTTTTTATTAGATGTAGGACTAGAA
TATCTTAGTCTTAGTAGAAGTAGTAAAACCCTTTCTGGAGGCGAATCCCAAAGGATTCGTTTGGCAACTCAGATAGGCTC
GCAATTAGTAAATGTGCTTTATATTTTAGACGAACCTTCTATTGGGCTTCACCAGAGAGATAATGAAAGACTTATCAACT
CTTTAAAAAGTTTACGAGATTTGGGGAACTCCGTTCTTGTGGTGGAACACGACAAGGATATGATTTTAGAAGCCGATGAA
GTGCTAGATATTGGACCTAAAGCTGGTAAGTATGGCGGAAAAGTATTGTGGCAAGGCAGCCCAAAAGATTTAATAAAAGC
TGACACCATTACAGCAGACTACCTCACAGGAAGAAGAAAAATAGAAATTCCCGAAAAAAGAAGAGAAGGCAACGGTAACT
CGATTGTCCTCAAAGGAGCTACGGGAAATAATCTTAAAAATGTAACCCTAAAAATCCCTTTAGGAAAGATGGTAGTGGTT
ACAGGTATTTCGGGGAGTGGTAAATCTTCGTTAATCAACGGAACACTCTACCCTATTCTCAACCGACATTTTTATCGTGC
TGTACAAGAGCCTCTACCATACAAAAAAATAGAGGGCATAGAGCATATAGACAAAATAGTAGATGTAGACCAAACGCCAA
TTGGTAGAACGCCTCGTTCTAATCCTGCCACTTATACAGGTGTGTTTTCGGATATTCGAACACTATTTGCTAACCTCCCA
GAAAGTAAAATTAGAGGTTATAAGGCAGGGAGATTTTCGTTTAATGTTAAAGGTGGACGCTGCGAAACTTGTCAAGGAGG
TGGTTTGAAAGTGATTGAAATGAATTTCTTGCCTGATGTCTATGTACATTGCGAAACCTGCAACGGCAAACGCTTTAATA
GAGAGACCTTGGAGGTAAGATATAAAGGTAAATCTATATCCGATGTCCTAGATATGACTATAGACGAAGCTGTGGAATTT
TTTCAGCCAATCCCCAAAATCTATTCTAAGGTGAAAACGCTACAAGAAGTTGGTTTAGGTTATATTACCTTAGGACAGCA
GTCTACTACACTTTCAGGCGGAGAGGCTCAAAGGGTAAAATTGGCTACAGAACTTTCTAAGAAACAAACAGGTAAAACAC
TTTATATCTTAGATGAACCTACCACAGGACTGCATTTTGAAGATGTTAAGATTCTGATGGAGGTTATCCAAAAGCTAGTA
GATTTGGGTAACTCTTTTATCATTATTGAACATAATATGGACGTGATAAAACTTGCCGACCATATTATAGATGTAGGTCC
AGAAGGTGGTAAAAATGGAGGAAGCATTGTGGCAGAAGGTACTCCAGAAGAAATTATAAAGAATAAAAAATCTATCACAG
GTAAATTTTTGAAAAAAGAAATGTAG

Domains

Predicted by InterProScan.

• UvrA interaction domain (UvrA_inter) (135-241)

• UvrA DNA-binding domain (UvrA_DNA-bind) (294-391)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
uvrA	Streptococcus pneumoniae R6	51.801	100	0.52
uvrA	Streptococcus pneumoniae TIGR4	51.801	100	0.52
uvrA	Streptococcus pneumoniae D39	51.801	100	0.52