Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   VIX88_RS11250 Genome accession   NZ_CP142016
Coordinates   2240038..2242128 (+) Length   696 a.a.
NCBI ID   WP_064970120.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 59RAST107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2235038..2247128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIX88_RS11230 (VIX88_11230) - 2235685..2236404 (-) 720 WP_222535091.1 DNA-binding domain-containing protein -
  VIX88_RS11235 (VIX88_11235) - 2236433..2237608 (-) 1176 WP_064970117.1 hypothetical protein -
  VIX88_RS11240 (VIX88_11240) - 2237625..2238275 (-) 651 WP_064970118.1 hypothetical protein -
  VIX88_RS11245 (VIX88_11245) - 2238976..2239920 (-) 945 WP_064970119.1 sulfate/molybdate ABC transporter ATP-binding protein -
  VIX88_RS11250 (VIX88_11250) recG 2240038..2242128 (+) 2091 WP_064970120.1 ATP-dependent DNA helicase RecG Machinery gene
  VIX88_RS11255 (VIX88_11255) - 2242166..2242885 (-) 720 WP_064970124.1 hypothetical protein -
  VIX88_RS11260 (VIX88_11260) - 2242966..2243400 (+) 435 WP_064970121.1 RNA-binding S4 domain-containing protein -
  VIX88_RS11265 (VIX88_11265) - 2243372..2243899 (-) 528 WP_064970122.1 shikimate kinase -
  VIX88_RS11290 (VIX88_11290) rbfA 2244881..2245240 (+) 360 WP_004920310.1 30S ribosome-binding factor RbfA -
  VIX88_RS11295 (VIX88_11295) - 2245253..2246473 (+) 1221 WP_214193880.1 ABC transporter permease -

Sequence

Protein


Download         Length: 696 a.a.        Molecular weight: 79636.40 Da        Isoelectric Point: 9.7043

>NTDB_id=839129 VIX88_RS11250 WP_064970120.1 2240038..2242128(+) (recG) [Riemerella anatipestifer strain 59RAST107]
MTLETSIEYLKGVGPERAKLIKNLLGISTVEDLLTFYPIRYLDKSRLYRVADLQKNADVEVQLKGKIRELQEVVYGKGQK
RLSAKFYDETGVIELVWFRYTKWMVEQMPINKEVFIFGKVNWFNGVFSMPHPEIELDEKKALSETLLPIYSGSEKLIKRG
VNNKFFQTIIREVIKQTSFFLEENLPSNILSSLKLIGRREAYQNIHFPQNINWIDEANKRLKFEEAFFFQLGYGLKKQYQ
KVSNVGIPFPLVGDYFNNFYQNKLPFELTNAQKRVLKEIRNDMKKPIQMNRLLQGDVGSGKTMVALLSMLLALDNGTQAC
LMAPTEILAQQHYNSIAQLLEGTNIEVRLLTGSTKKSERKEIHEGLESGRLSILVGTHAILEDAVKFKNLGLGIIDEQHR
FGVAQRAKLWSKNKIPPHILIMTATPIPRTLAMSFYSDLDVSVIDELPMGRKPIITAHRREKDRLSVYQFAKEEIQKGRQ
IYFVYPLIEESETLDYKNLMEGFGIVLDYFKDYEVTMLHGKMKPHEKDEAMNYFASGKAQIMVATTVIEVGVNVPNASVM
VIESAERFGLSQLHQLRGRVGRGAEQSYCILMTSDKLSTEGRKRIKTMCETNDGFKISEVDMQLRGPGDILGTQQSGIVD
FKKLDLTKDASVIKVAQKIVTLLVQSDPNLTHPAHTQLRNYYIKQYKGKNKWGKIS

Nucleotide


Download         Length: 2091 bp        

>NTDB_id=839129 VIX88_RS11250 WP_064970120.1 2240038..2242128(+) (recG) [Riemerella anatipestifer strain 59RAST107]
TTGACTTTAGAAACTTCCATAGAATACCTTAAAGGAGTAGGTCCAGAGCGGGCAAAACTCATCAAAAATCTGCTGGGAAT
AAGTACAGTGGAAGACTTGCTTACATTCTATCCAATAAGATATTTAGATAAAAGCCGATTGTATAGAGTAGCAGATTTGC
AGAAAAATGCAGATGTAGAGGTGCAATTAAAGGGTAAGATAAGAGAATTGCAGGAGGTGGTTTATGGTAAGGGACAAAAG
CGATTGTCTGCAAAATTCTACGATGAAACAGGCGTGATAGAACTGGTTTGGTTTAGATATACCAAATGGATGGTGGAACA
GATGCCTATCAATAAAGAAGTATTTATTTTTGGTAAGGTCAATTGGTTTAATGGAGTTTTTTCTATGCCTCATCCAGAGA
TAGAGCTGGACGAGAAAAAAGCCTTGTCAGAAACTTTATTACCCATCTATTCAGGGAGTGAAAAGCTCATTAAAAGAGGG
GTTAATAATAAATTTTTCCAAACCATTATTAGGGAAGTTATTAAACAGACTTCTTTCTTTTTAGAAGAAAATTTACCGAG
TAATATTCTTAGTTCGCTTAAACTGATTGGTAGAAGAGAGGCTTACCAAAATATCCATTTTCCTCAAAATATAAACTGGA
TAGATGAGGCTAATAAACGATTGAAATTTGAGGAAGCTTTTTTCTTTCAGCTAGGGTATGGTCTTAAAAAACAATATCAA
AAAGTATCTAATGTAGGGATTCCCTTTCCGCTAGTAGGAGATTATTTTAATAATTTTTATCAAAATAAATTACCTTTTGA
ACTCACTAATGCCCAAAAGAGAGTTCTAAAAGAAATCAGGAATGATATGAAAAAGCCTATCCAAATGAACAGGCTTTTGC
AGGGCGATGTAGGTTCGGGTAAAACTATGGTGGCGTTGCTTTCAATGCTATTAGCGTTGGATAATGGGACACAGGCGTGC
CTTATGGCTCCTACGGAAATTTTGGCTCAACAACATTATAACAGCATCGCTCAACTTTTAGAAGGAACGAACATTGAAGT
AAGGCTCTTAACAGGTTCTACAAAAAAATCGGAACGGAAAGAAATTCACGAAGGATTGGAGTCTGGGAGGTTATCTATCT
TGGTAGGAACTCATGCGATATTGGAAGATGCGGTTAAGTTTAAAAATTTGGGCTTGGGCATTATAGACGAGCAACATCGT
TTTGGGGTGGCACAAAGAGCGAAACTTTGGTCTAAAAATAAAATTCCACCACATATTTTAATTATGACGGCAACGCCTAT
CCCTAGAACTTTAGCAATGAGTTTTTATTCAGATTTAGATGTTTCGGTAATAGATGAGTTGCCGATGGGGAGAAAGCCTA
TCATTACAGCTCATAGGAGAGAAAAGGACAGGCTTTCGGTTTATCAGTTCGCAAAGGAAGAAATCCAAAAGGGAAGACAA
ATTTATTTTGTGTATCCATTAATAGAAGAGTCGGAGACTTTAGACTATAAAAACTTGATGGAAGGCTTTGGAATAGTGCT
AGACTATTTTAAGGATTACGAAGTTACCATGCTACACGGCAAAATGAAACCTCACGAAAAAGATGAAGCGATGAATTATT
TTGCTTCAGGTAAGGCTCAAATTATGGTAGCTACTACGGTTATAGAAGTGGGGGTAAATGTACCCAATGCTTCGGTAATG
GTAATAGAAAGTGCCGAAAGGTTTGGACTTTCACAGTTGCACCAACTTAGAGGTAGAGTGGGACGAGGGGCAGAGCAGAG
CTATTGTATTTTGATGACCTCGGATAAACTATCTACGGAAGGACGGAAACGAATTAAAACGATGTGCGAAACCAATGATG
GATTTAAAATCTCGGAGGTAGATATGCAACTTAGAGGTCCTGGGGATATATTGGGAACTCAGCAAAGTGGTATTGTAGAT
TTTAAAAAGTTGGATTTAACTAAAGATGCTTCGGTAATTAAGGTAGCACAGAAAATAGTAACCCTATTGGTGCAAAGCGA
TCCTAATTTGACTCATCCTGCACACACTCAATTAAGAAATTACTACATAAAGCAATATAAAGGTAAAAACAAATGGGGAA
AAATCAGTTGA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(7-174)

Helicase conserved C-terminal domain (Helicase_C)

(473-583)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(611-696)

DEAD/DEAH box helicase (DEAD)

(270-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

41.739

99.138

0.414
  recG/mmsA Streptococcus pneumoniae R6

40.438

98.42

0.398
  recG/mmsA Streptococcus pneumoniae R36A

40.438

98.42

0.398
  recG Neisseria meningitidis strain C311

41.4

94.397

0.391