Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   VIX88_RS03445 Genome accession   NZ_CP142016
Coordinates   674565..677330 (-) Length   921 a.a.
NCBI ID   WP_064970274.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 59RAST107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 669565..682330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIX88_RS03425 (VIX88_03425) - 670039..670755 (+) 717 WP_064970270.1 DUF3822 family protein -
  VIX88_RS03430 (VIX88_03430) - 670781..671341 (+) 561 WP_064970271.1 RsmD family RNA methyltransferase -
  VIX88_RS03435 (VIX88_03435) kdsA 671489..672298 (+) 810 WP_109474891.1 3-deoxy-8-phosphooctulonate synthase -
  VIX88_RS03440 (VIX88_03440) - 672325..674502 (+) 2178 WP_214194037.1 TonB-dependent receptor plug domain-containing protein -
  VIX88_RS03445 (VIX88_03445) uvrA 674565..677330 (-) 2766 WP_064970274.1 excinuclease ABC subunit UvrA Machinery gene
  VIX88_RS03450 (VIX88_03450) eptA 677378..678901 (-) 1524 WP_214194038.1 phosphoethanolamine--lipid A transferase EptA -
  VIX88_RS03455 (VIX88_03455) - 678888..679715 (-) 828 WP_064970276.1 phosphatase PAP2 family protein -
  VIX88_RS03460 (VIX88_03460) - 679764..680384 (-) 621 WP_064970277.1 trimeric intracellular cation channel family protein -
  VIX88_RS03465 (VIX88_03465) coaD 680416..680874 (-) 459 WP_004919697.1 pantetheine-phosphate adenylyltransferase -
  VIX88_RS03470 (VIX88_03470) - 680881..681864 (-) 984 WP_064970278.1 D-alanine--D-alanine ligase -

Sequence

Protein


Download         Length: 921 a.a.        Molecular weight: 103395.51 Da        Isoelectric Point: 6.0862

>NTDB_id=839100 VIX88_RS03445 WP_064970274.1 674565..677330(-) (uvrA) [Riemerella anatipestifer strain 59RAST107]
MNIKNNIFVKNAHLNNLKNIDVLIPKNKLVVVTGVSGSGKSSLAFDTIYAEGQRRYVESLSSYARQFLGRLEKPKIDDIK
GLAPSIAIQQKVISSNPRSTVGTSTEIYDYLKLLFARVGRTYSPVSGDEVKKDSISDVITYIEENPNQEFLLTASLSFAD
GDFKSLLNTLKVSGFTRLEINGNIAEIEDLESFGFVPEKEMLLNLVIDRFVYEDDEYFLQRLADSIQTAFYEGHGSCALK
NIETQNIKHFSNLFEADGISFLEPNLHFFSFNNPYGACPTCEGYGKVVGIDEDLVIPNKRLSVYEDAVACWKGETMSEWK
MHFIKNAPDFPIHKPYFELPKEQKQLLWRGTGAKNFPCIDQFFRMLEENLYKIQYRVMLSRYRGKTKCPDCEGLRLRKET
EWVKVGGHNIQSLMELPLDELLPLIKNLKLTKHEQEIAKRLLYEITTRLEFLLKVGLGYLTLNRTSNTLSGGESQRINLA
TSLGSSLVGSIYILDEPSIGLHSQDTENLIEVLKNLRDLGNTVIVVEHDEDIMRAADYIIDIGPEAGFLGGELVFAGDFK
DLKEADTLTSKYLTGRLEIAVPKRRRKAKSFINIKGARQNNLKNIDVDIPLENLVVVTGVSGSGKSTLMKEVLTNDIQIQ
LGMGGKKADYDYVEFPPQLVKHIELIDQNPIGKSSRSNPVTYLKAYDDIRDLFAKQRHSKTMNLKPKHFSFNVDGGRCDE
CKGEGIITISMQFMADVELECEHCKGARFKSEILEVKFDEKNIADILQMTVDEAIDFFSDNKQDKIVTKLKPLQEVGLGY
LKLGQSSSTLSGGEAQRVKLASFLVKGVTTEKTLFIFDEPSTGLHFHDIQKLLTSLQALIELGHSVVVIEHQPDIIKSAD
WIIDIGPNAGKYGGEVVFAGTPEDLAKDKKSKTAKFVAEKL

Nucleotide


Download         Length: 2766 bp        

>NTDB_id=839100 VIX88_RS03445 WP_064970274.1 674565..677330(-) (uvrA) [Riemerella anatipestifer strain 59RAST107]
ATGAATATTAAAAATAATATTTTTGTTAAAAACGCACATCTTAACAACCTTAAAAACATAGATGTTCTCATACCTAAAAA
CAAACTAGTGGTAGTAACTGGTGTGTCTGGTAGTGGGAAATCGTCTTTAGCCTTTGATACTATTTATGCCGAAGGGCAGA
GGCGTTATGTGGAGAGTTTAAGCTCCTATGCTAGACAGTTTTTGGGGCGTTTAGAGAAACCAAAGATAGACGATATTAAA
GGCTTAGCACCATCTATCGCCATACAACAGAAAGTAATTTCTTCTAATCCAAGGTCTACAGTAGGAACTTCCACCGAAAT
TTACGATTATCTTAAATTGTTATTCGCTCGTGTGGGGCGTACCTATTCGCCTGTATCTGGTGATGAGGTGAAAAAGGACA
GCATTTCTGATGTTATTACTTACATAGAAGAAAATCCTAATCAAGAGTTTCTACTCACAGCATCGCTTTCGTTTGCTGAT
GGTGATTTTAAATCACTATTAAATACACTAAAAGTTTCAGGATTTACTAGGTTAGAAATTAACGGAAATATCGCTGAAAT
AGAAGATTTAGAGAGTTTTGGCTTCGTTCCTGAAAAAGAGATGTTGCTTAATTTGGTTATTGACCGCTTTGTTTACGAGG
ATGATGAGTATTTTCTGCAACGCCTAGCAGATTCTATCCAAACGGCCTTCTACGAGGGGCACGGCTCCTGTGCTTTAAAA
AATATTGAAACTCAAAATATAAAACATTTTTCTAACCTTTTTGAAGCTGATGGGATTTCGTTTTTAGAACCAAATCTTCA
TTTTTTCAGTTTTAATAATCCTTACGGAGCGTGTCCTACTTGTGAGGGCTATGGTAAAGTGGTTGGGATAGACGAAGATT
TGGTAATTCCTAACAAAAGGCTTTCGGTTTACGAAGATGCTGTCGCTTGTTGGAAAGGAGAAACGATGAGCGAGTGGAAA
ATGCACTTTATCAAAAATGCTCCAGATTTTCCAATCCATAAACCGTATTTTGAACTTCCTAAAGAGCAAAAACAACTTTT
ATGGAGAGGAACAGGAGCTAAAAACTTTCCGTGTATAGACCAGTTTTTCCGTATGTTGGAGGAGAATTTGTATAAGATAC
AATACCGAGTGATGCTCTCTCGTTACAGAGGCAAGACTAAATGTCCCGACTGCGAAGGTCTAAGATTAAGAAAAGAAACC
GAATGGGTAAAAGTAGGAGGGCATAACATACAATCGTTAATGGAGTTGCCATTAGACGAACTTCTGCCTTTAATTAAGAA
CCTTAAACTCACCAAACACGAGCAAGAAATTGCTAAAAGATTACTCTATGAAATTACTACTAGACTAGAGTTTTTGTTAA
AAGTAGGCTTGGGATATTTAACGCTAAACCGTACCTCTAATACTTTGTCAGGTGGGGAAAGTCAAAGGATTAACTTAGCG
ACGAGCTTAGGGAGTTCTTTGGTTGGGTCTATTTATATTTTGGACGAACCTTCCATTGGACTACATTCGCAGGATACCGA
GAATTTAATAGAAGTTCTAAAGAATTTAAGAGATTTAGGCAATACGGTTATTGTTGTGGAGCATGATGAGGATATTATGC
GTGCCGCAGATTATATTATAGACATAGGTCCAGAAGCAGGTTTCCTTGGGGGAGAGTTGGTCTTCGCAGGCGATTTTAAA
GACCTCAAAGAAGCCGATACTTTAACTTCTAAATACCTTACAGGAAGGCTAGAAATAGCAGTACCAAAAAGGAGAAGGAA
AGCTAAATCGTTCATCAATATCAAAGGAGCTAGGCAAAATAACCTTAAAAATATAGATGTTGATATTCCTTTGGAGAATT
TGGTGGTGGTTACGGGGGTGTCGGGCTCTGGTAAATCTACATTGATGAAAGAGGTTTTGACTAACGATATTCAAATCCAG
TTAGGAATGGGAGGCAAAAAAGCCGACTATGATTATGTGGAATTTCCACCTCAACTTGTGAAGCATATAGAATTGATAGA
CCAAAATCCTATCGGAAAATCCTCTAGGTCTAACCCTGTAACTTATCTTAAGGCTTATGATGATATTAGGGATTTGTTCG
CTAAGCAGCGTCATTCTAAAACTATGAATTTGAAGCCTAAGCACTTTTCGTTTAATGTAGATGGTGGGAGATGTGATGAG
TGTAAAGGTGAGGGTATTATTACCATATCTATGCAGTTTATGGCAGATGTGGAACTAGAATGTGAGCATTGTAAAGGAGC
AAGATTTAAGTCCGAGATATTGGAAGTTAAATTTGATGAGAAAAACATTGCAGATATTCTACAAATGACGGTAGATGAAG
CGATTGATTTCTTTAGTGATAATAAACAAGATAAAATAGTTACTAAACTAAAACCATTGCAAGAGGTAGGTCTAGGCTAT
CTTAAACTAGGACAAAGTTCTTCTACGCTTTCAGGTGGGGAAGCTCAAAGGGTAAAGTTGGCTTCATTTTTAGTGAAGGG
CGTAACTACGGAGAAAACGCTTTTCATCTTTGATGAACCTTCCACAGGGCTTCATTTTCACGATATACAAAAATTATTAA
CCTCATTACAGGCACTTATAGAGCTGGGGCATTCTGTAGTAGTTATAGAGCATCAGCCAGATATTATTAAGTCAGCAGAT
TGGATCATAGATATAGGTCCTAATGCAGGTAAATATGGCGGAGAAGTGGTTTTTGCTGGAACACCTGAGGATTTAGCAAA
AGATAAAAAATCCAAAACTGCTAAATTCGTAGCCGAAAAACTTTAA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(291-356)

UvrA interaction domain (UvrA_inter)

(136-240)

ABC transporter (ABC_tran)

(602-841)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

44.167

100

0.46
  uvrA Streptococcus pneumoniae TIGR4

44.167

100

0.46
  uvrA Streptococcus pneumoniae D39

44.167

100

0.46