Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   F0329_RS15725 Genome accession   NZ_CP126605
Coordinates   3187831..3188445 (-) Length   204 a.a.
NCBI ID   WP_038639434.1    Uniprot ID   -
Organism   Citrobacter werkmanii strain C5.1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3182831..3193445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0329_RS15710 (F0329_15720) helD 3183055..3185109 (-) 2055 WP_038639439.1 DNA helicase IV -
  F0329_RS15715 (F0329_15725) - 3185235..3185681 (+) 447 WP_038639436.1 YccF domain-containing protein -
  F0329_RS15720 (F0329_15730) yccS 3185700..3187853 (+) 2154 WP_038643097.1 YccS family putative transporter -
  F0329_RS15725 (F0329_15735) sxy/tfoX 3187831..3188445 (-) 615 WP_038639434.1 TfoX/Sxy family DNA transformation protein Regulator
  F0329_RS15730 (F0329_15740) sulA 3188662..3189171 (+) 510 WP_038639432.1 SOS-induced cell division inhibitor SulA -
  F0329_RS15735 (F0329_15745) ompA 3189529..3190587 (+) 1059 WP_038639429.1 porin OmpA -
  F0329_RS15740 (F0329_15750) matP 3190686..3191138 (-) 453 WP_038639426.1 macrodomain Ter protein MatP -
  F0329_RS15745 (F0329_15755) - 3191324..3193084 (+) 1761 WP_038639423.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23240.74 Da        Isoelectric Point: 8.9204

>NTDB_id=839094 F0329_RS15725 WP_038639434.1 3187831..3188445(-) (sxy/tfoX) [Citrobacter werkmanii strain C5.1]
MKELSYAKIYKSQEYLASLGTIHYRSLFGSYSLTVGDTVFAMVANGELYLRACEQSVQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRTLGAQMCWLKLRQNN
PALTVKILYALEGAVSGMHEAALPAVRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=839094 F0329_RS15725 WP_038639434.1 3187831..3188445(-) (sxy/tfoX) [Citrobacter werkmanii strain C5.1]
ATGAAAGAACTTTCTTATGCAAAGATCTATAAATCACAAGAATATCTGGCGTCTCTGGGAACAATTCACTATCGCTCATT
ATTTGGCAGTTACAGTCTGACGGTTGGGGATACGGTCTTTGCTATGGTCGCCAACGGTGAGTTATATCTTCGGGCCTGCG
AACAGAGCGTACAGTACTGTGTAAAAAATTCGCCTGTCTGGCTGACATTTATAAAGCGCGGGCGTCCGGTGGTACTCAAC
TACTATCAGGTGAATGATGCGCTGTGGCAAAACCAGCAGCAGTTGGTGTCGTTATCGCGGTACTCATTGGATGCTGCTGT
TAAGGAAAAACAGAGTCGCTTTGCTCAACATCGTCTGCGGGAACTACCAAATATGACGTTTCATCTGGAGACCCTGCTAA
ATGAAGCAGGGATTAAAGATGAGGGAACATTGCGAACGTTGGGCGCCCAAATGTGCTGGCTGAAACTGCGGCAAAACAAT
CCAGCCCTGACGGTAAAAATACTTTATGCCCTTGAAGGTGCGGTCAGTGGCATGCATGAAGCTGCGCTCCCGGCGGTCCG
TCGCCAGGAGCTGGTGGAGTGGGTCAGTTCTCTTACGCCGGAGCCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686