Detailed information NTG0839085

Bioinformatically predicted

Overview

• Name: recQ
• Type: Machinery gene
• Locus tag: VFH86_RS12730
• Genome accession: NZ_CP142014
• Coordinates: 2818817..2820652 (-)
• Length: 611 a.a.
• NCBI ID: WP_032482250.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain LK-18
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2813817..2825652

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VFH86_RS12705 (VFH86_12705)	-	2813824..2814879 (-)	1056	WP_000739877.1	porin	-
VFH86_RS12710 (VFH86_12710)	murP	2815042..2816487 (-)	1446	WP_001074156.1	PTS N-acetylmuramic acid transporter subunit IIBC	-
VFH86_RS12715 (VFH86_12715)	murQ	2816511..2817413 (-)	903	WP_000687209.1	N-acetylmuramic acid 6-phosphate etherase	-
VFH86_RS12720 (VFH86_12720)	-	2817644..2818492 (+)	849	WP_000114969.1	MurR/RpiR family transcriptional regulator	-
VFH86_RS12725 (VFH86_12725)	-	2818513..2818824 (-)	312	WP_076007479.1	DUF3630 family protein	-
VFH86_RS12730 (VFH86_12730)	recQ	2818817..2820652 (-)	1836	WP_032482250.1	ATP-dependent DNA helicase RecQ	Machinery gene
VFH86_RS12735 (VFH86_12735)	rarD	2820879..2821721 (+)	843	WP_248335835.1	EamA family transporter RarD	-
VFH86_RS12740 (VFH86_12740)	ggt	2821895..2823649 (+)	1755	WP_267750449.1	gamma-glutamyltransferase	-
VFH86_RS12745 (VFH86_12745)	-	2823806..2824609 (+)	804	WP_046127266.1	AraC family transcriptional regulator	-
VFH86_RS12750 (VFH86_12750)	-	2824684..2825352 (+)	669	WP_001896743.1	LysE family translocator	-

Sequence

Protein

• Length: 611 a.a.
• Molecular weight: 69158.44 Da
• Isoelectric Point: 7.1164

>NTDB_id=839085 VFH86_RS12730 WP_032482250.1 2818817..2820652(-) (recQ) [Vibrio cholerae strain LK-18]
MTATLMAESSALFATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISL
MKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTTEFIERLSHLPLAMIAVDEAHCISQWGHD
FRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQ
CGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPC
GNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI
HKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYV
VFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLTYHG

Nucleotide

• Length: 1836 bp

>NTDB_id=839085 VFH86_RS12730 WP_032482250.1 2818817..2820652(-) (recQ) [Vibrio cholerae strain LK-18]
ATGACCGCGACTTTAATGGCTGAATCTTCTGCTCTCTTTGCCACTCCTGAACGTGTTTTGCACGAGGTGTTTGGCTATCA
GCAATTTCGCGTCGGTCAGCAAGAGGTGATTGAGGCGGCGCTGGCTGGGCGTGATAGCTTGGTCATTATGCCGACTGGCG
GTGGTAAATCGCTCTGTTACCAGATCCCTGCGTTGGTGCTGGAAGGGGTCACGTTAGTGATTTCTCCCCTGATTTCGCTG
ATGAAAGATCAGGTTGACCAGCTTAAAGCCAACGGTGTCGCCGCCGAGTGTGTCAATTCCACCTTGGCGCGCGAGGAGCT
GATCGCGATTTATAACCGCATGCACGCTGGCCAGCTCAAGCTGCTGTATGTGTCGCCAGAGCGGGTATTGACCACCGAGT
TTATCGAACGGCTCAGCCATCTGCCGTTAGCCATGATTGCGGTCGATGAAGCGCACTGTATTTCGCAATGGGGACACGAC
TTTCGTCCTGAATACGCCTCATTAGGCCAGCTTAAGCAGCGTTTCCCGAATGTGCCGGTGATGGCGCTGACGGCGACTGC
GGATGACGCGACGCGTCACGACATTATGCAGCGTTTGCAGCTCAATGAGCCGCATCAGTATCTGGGCAGTTTTGACCGCC
CGAACATCCGCTACATGCTGGTGGAAAAACATAAGCCGGTTTCACAAGTGATCCGTTATCTGGAAACGCAGCGCGGGCAG
TGCGGCATCATCTATTGTGGTAGCCGTAAAAAAGTCGAAATGCTCACCGAAAAGCTGTGCGGCAACCACATTCGCGCCGC
CAGTTACCATGCCGGGATGGACGCCGATGAACGCGCTTGGGTGCAAGAGGCGTTTCAGCGTGATGACCTGCAAATTGTGG
TGGCGACTGTGGCGTTTGGCATGGGGATTAATAAACCCAACGTGCGCTTTGTGGTGCATTTTGATATTCCGCGCAACATT
GAATCCTACTATCAGGAAACTGGCCGCGCAGGGCGTGATGGCCTGCCTGCTGAAGCCATGATGCTGTACGACCCTGCTGA
CATGAACTGGCTGCGCCGCATGCTCGATGAAAAGCCCGATGGCGCGCAAAAACAGGTTGAAAGCCACAAGCTCACCGCCA
TGGGCGCGTTTGCTGAAGCGCAAACTTGTCGCCGCCAAGTGTTGCTCAATTATTTTGGCGAATATCGCGATAAGCCATGT
GGTAACTGCGATATCTGTCTCGACCCGCCCAAGCGTTTTGATGCCACGGAAGAGGCACGCAAAGCCTTGTCGTGTGTCTA
TCGCGTCAATCAAAACTTCGGGATTGGTTATGTGGTGGAAGTGCTGCGCGGGATGCAGAACATCCGTATTCGCGAGCATG
GCCACGATAAAATCACCACCTACGGCATTGGCCGCGATCACAGCCATGATTACTGGGTGAGTATTTTCCGCCAACTGATC
CACAAAGGCATGCTCTACCAGAACATCACGCGTAACTCGACATTGCAACTGACCGAAGAAGCGCGCCCTTTGCTGCGCGG
TGAAATGAATATTGAGCTGGCGGTACCGCGTTTAGATACCGCGGCGCGCGCGGCGAAATCCGATAAGTTGTCGGGCAAAA
ACTACGACAAAAAGCTGTTTGCCAAACTGCGTAAGCTGCGTAAATCGATCGCCGATGATGAAGGCTTACCACCGTATGTG
GTGTTCAGTGACGCCACCTTGATTGATATGGCGGAGATCATGCCAACCTCTTACGGCGAAATGTTGGCGGTGAATGGGGT
TGGGCAGCGCAAGCTGGAAAAATACGCCGACCCGTTTTTGGATCTGATTCAGGAGCATTTGACTTACCATGGCTGA

Domains

Predicted by InterProScan.

• HRDC domain (HRDC) (537-603)

• RecQ zinc-binding (RecQ_Zn_bind) (346-407)

• DEAD/DEAH box helicase (DEAD) (33-188)

• RQC domain (RQC) (409-517)

• Helicase conserved C-terminal domain (Helicase_C) (229-333)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recQ	Bacillus subtilis subsp. subtilis str. 168	40.641	97.054	0.394