Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   VDS58_RS19105 Genome accession   NZ_CP141997
Coordinates   3543299..3544012 (-) Length   237 a.a.
NCBI ID   WP_260665270.1    Uniprot ID   -
Organism   Bacillus subtilis strain PM0031     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3538299..3549012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS19085 (VDS58_19085) ghrB 3538444..3539421 (+) 978 WP_087614731.1 2-hydroxyacid dehydrogenase -
  VDS58_RS19090 (VDS58_19090) psdB 3539458..3541398 (-) 1941 WP_015483744.1 lantibiotic ABC transporter permease PsdB -
  VDS58_RS19095 (VDS58_19095) psdA 3541373..3542152 (-) 780 WP_003228167.1 lantibiotic ABC transporter ATP-binding protein PsdA -
  VDS58_RS19100 (VDS58_19100) psdS 3542235..3543305 (-) 1071 WP_260665271.1 two-component sensor histidine kinase PsdS -
  VDS58_RS19105 (VDS58_19105) braR 3543299..3544012 (-) 714 WP_260665270.1 two-component system response regulator PsdR Regulator
  VDS58_RS19110 (VDS58_19110) - 3544159..3544368 (+) 210 WP_021480676.1 hypothetical protein -
  VDS58_RS19115 (VDS58_19115) yvcN 3544404..3545168 (-) 765 WP_260665269.1 arylamine N-acetyltransferase family protein -
  VDS58_RS19120 (VDS58_19120) crh 3545169..3545426 (-) 258 WP_003219835.1 HPr family phosphocarrier protein -
  VDS58_RS19125 (VDS58_19125) whiA 3545450..3546400 (-) 951 WP_260665268.1 DNA-binding protein WhiA -
  VDS58_RS19130 (VDS58_19130) mgfK 3546423..3547376 (-) 954 WP_003244450.1 gluconeogenesis morphogenetic factor -
  VDS58_RS19135 (VDS58_19135) rapZ 3547378..3548265 (-) 888 WP_003243903.1 RNase adapter RapZ -
  VDS58_RS19140 (VDS58_19140) rppI 3548290..3548766 (-) 477 WP_010886622.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27571.48 Da        Isoelectric Point: 4.6774

>NTDB_id=838983 VDS58_RS19105 WP_260665270.1 3543299..3544012(-) (braR) [Bacillus subtilis strain PM0031]
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDGFYWCRQIRTISNTPIIFISA
RTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYSPSLPQESRIVELGGLTIYPDQNEAEWNSVRILFSQK
EFQLLSIFVREHKKIVSRDELLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLKDCISTIRGQGYQFQVNRKDEAEC

Nucleotide


Download         Length: 714 bp        

>NTDB_id=838983 VDS58_RS19105 WP_260665270.1 3543299..3544012(-) (braR) [Bacillus subtilis strain PM0031]
GTGTATCGGATTTTGCTTGTGGAAGATGATGAGCGGATTGCTTCTTTGCTGGGCGGTCATCTTCAAAAATACGGATATGA
AGTGAAAATTGCTGAACAGCTGAATGATATAAAATTGGAATTTGCAGAAATGAAGCCTGACCTTGTGCTGCTTGATATCA
ACCTGCCTTTTTTTGACGGGTTTTATTGGTGCAGGCAAATCCGTACCATTTCCAATACGCCGATTATCTTTATATCGGCA
CGGACCGATGAGCTGAATCAGGTAATGGCGATTGAAAATGGCGGCGATGATTATATCACAAAGCCGTTCCATCTAGAGGT
AGTGATGGCCAAAATCAAAAGCGTCCTGCGCCGCACATATGGTGAATACTCGCCCTCTTTGCCGCAGGAATCAAGAATAG
TGGAGCTTGGCGGGCTAACGATTTATCCTGATCAAAATGAAGCGGAGTGGAACAGCGTCCGGATTTTGTTTTCCCAAAAA
GAATTTCAGCTTCTCTCTATTTTTGTGAGGGAGCATAAAAAAATTGTTTCTCGTGATGAACTATTGGAGGCGTTATGGGA
TGACGTTGATTTTGTCGATGACAATACGTTAACGGTCAATGTCAACCGGCTGCGGAGAAAACTGGAGAATGCCGGACTGA
AAGATTGCATTTCCACAATCAGAGGACAAGGCTATCAATTTCAAGTCAATCGGAAGGATGAAGCGGAGTGTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

45.536

94.515

0.43