Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   VDS58_RS17115 Genome accession   NZ_CP141997
Coordinates   3156853..3157716 (-) Length   287 a.a.
NCBI ID   WP_014480705.1    Uniprot ID   Q9FAF1
Organism   Bacillus subtilis strain PM0031     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3151853..3162716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS17080 (VDS58_17080) mrpE 3152021..3152497 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  VDS58_RS17085 (VDS58_17085) mrpF 3152497..3152781 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  VDS58_RS17090 (VDS58_17090) mnhG 3152765..3153139 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  VDS58_RS17095 (VDS58_17095) yuxO 3153178..3153558 (-) 381 WP_069837723.1 hotdog fold thioesterase -
  VDS58_RS17100 (VDS58_17100) comA 3153577..3154221 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  VDS58_RS17105 (VDS58_17105) comP 3154302..3156614 (-) 2313 WP_014480703.1 sensor histidine kinase Regulator
  VDS58_RS17110 (VDS58_17110) comX 3156630..3156851 (-) 222 WP_014480704.1 competence pheromone ComX -
  VDS58_RS17115 (VDS58_17115) comQ 3156853..3157716 (-) 864 WP_014480705.1 polyprenyl synthetase family protein Regulator
  VDS58_RS17120 (VDS58_17120) degQ 3157901..3158041 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  VDS58_RS17125 (VDS58_17125) - 3158263..3158388 (+) 126 WP_003228793.1 hypothetical protein -
  VDS58_RS17130 (VDS58_17130) - 3158503..3158871 (+) 369 WP_046381300.1 hypothetical protein -
  VDS58_RS17135 (VDS58_17135) pdeH 3158847..3160076 (-) 1230 WP_046381301.1 cyclic di-GMP phosphodiesterase -
  VDS58_RS17140 (VDS58_17140) pncB 3160212..3161684 (-) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  VDS58_RS17145 (VDS58_17145) pncA 3161700..3162251 (-) 552 WP_014480709.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32882.57 Da        Isoelectric Point: 5.2201

>NTDB_id=838974 VDS58_RS17115 WP_014480705.1 3156853..3157716(-) (comQ) [Bacillus subtilis strain PM0031]
MKEIVDENILNEDLKVKLISFIKEKKQFSFAELAYYHYIAFDGKNDKAIELLASGIELLILSADIFDDIEDKDNLQASWM
KLDPSIATNAATALYTLSLQVIGSVSNHPKLLSLTLQYSLQSLQGQHVDLNLTASSESEYIEMIKLKSGSLVTLPSILGV
YLATGEYNETVEEYSRYLGIVEQIANDHYGLYYPNYNDFKTRHTLAFNYLKNKFNQSSIDLLNFYAQENHMINNLEDLKG
KLRESGVIQYLNVIKNLAVENFKESFKKLRLDEQRKNKLLIQLLRGI

Nucleotide


Download         Length: 864 bp        

>NTDB_id=838974 VDS58_RS17115 WP_014480705.1 3156853..3157716(-) (comQ) [Bacillus subtilis strain PM0031]
ATGAAGGAGATTGTGGATGAAAATATTTTAAATGAGGACTTAAAAGTGAAGCTCATTTCTTTTATCAAAGAAAAAAAACA
ATTTTCATTTGCAGAACTGGCTTATTACCATTACATAGCATTTGATGGAAAAAACGACAAAGCAATTGAGTTATTGGCGT
CAGGTATAGAACTTTTAATTTTATCTGCGGACATTTTTGACGATATTGAGGATAAGGACAATCTTCAGGCTTCTTGGATG
AAATTAGATCCTTCTATAGCAACTAACGCAGCTACCGCACTTTATACATTAAGTCTGCAAGTAATAGGTTCAGTCTCAAA
TCATCCAAAACTTTTAAGCCTTACTTTGCAATATTCACTCCAATCTTTACAAGGACAACATGTAGATTTGAATTTAACAG
CCTCATCAGAATCAGAGTATATTGAAATGATTAAACTTAAGTCGGGTTCTCTGGTAACATTGCCCAGTATTCTTGGTGTA
TATCTGGCAACTGGAGAATATAATGAAACAGTTGAGGAGTATTCACGTTATTTAGGTATAGTCGAGCAAATTGCAAATGA
TCACTATGGACTTTATTACCCTAACTATAATGACTTCAAAACTAGACATACGCTTGCCTTCAATTATCTTAAAAATAAAT
TTAACCAATCATCAATTGACTTATTAAATTTTTATGCGCAAGAAAATCATATGATAAATAATTTGGAAGATTTGAAGGGA
AAGTTAAGAGAATCAGGTGTAATACAATATTTGAATGTTATAAAAAATTTAGCAGTGGAAAATTTTAAGGAATCATTCAA
AAAACTGAGATTAGATGAACAAAGAAAAAATAAATTACTTATTCAATTATTAAGGGGGATTTAA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(45-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9FAF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

45

97.561

0.439