Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   VDS58_RS16110 Genome accession   NZ_CP141997
Coordinates   2970003..2970713 (-) Length   236 a.a.
NCBI ID   WP_042977616.1    Uniprot ID   -
Organism   Bacillus subtilis strain PM0031     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2965003..2975713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS16090 (VDS58_16090) cysK 2965070..2966005 (+) 936 WP_041054012.1 cysteine synthase A -
  VDS58_RS16095 (VDS58_16095) pepV 2966039..2967430 (-) 1392 WP_041054018.1 dipeptidase PepV -
  VDS58_RS16100 (VDS58_16100) pbuO 2967527..2968825 (+) 1299 WP_014480583.1 hypoxanthine/guanine permease PbuO -
  VDS58_RS16105 (VDS58_16105) ythQ 2968864..2970006 (-) 1143 WP_069837696.1 ABC transporter permease -
  VDS58_RS16110 (VDS58_16110) pptA 2970003..2970713 (-) 711 WP_042977616.1 ABC transporter ATP-binding protein Regulator
  VDS58_RS16115 (VDS58_16115) ytzE 2971003..2971224 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  VDS58_RS16120 (VDS58_16120) rsuA 2971346..2972065 (-) 720 WP_017695479.1 pseudouridine synthase -
  VDS58_RS16125 (VDS58_16125) murJ 2972134..2973768 (-) 1635 WP_014480588.1 lipid II flippase MurJ -
  VDS58_RS16130 (VDS58_16130) ytfP 2973971..2975233 (+) 1263 WP_003229222.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26495.53 Da        Isoelectric Point: 5.1632

>NTDB_id=838970 VDS58_RS16110 WP_042977616.1 2970003..2970713(-) (pptA) [Bacillus subtilis strain PM0031]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEESEFAHRAQSLLQTFSLDQVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRP

Nucleotide


Download         Length: 711 bp        

>NTDB_id=838970 VDS58_RS16110 WP_042977616.1 2970003..2970713(-) (pptA) [Bacillus subtilis strain PM0031]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTGGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATTCTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTCTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGAGAGTGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCAGGTTAAACATGAGCTGCCTGTCACCTTTTCAAAAGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGCGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432