Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QPK06_RS11380 Genome accession   NZ_CP126578
Coordinates   2405466..2406905 (+) Length   479 a.a.
NCBI ID   WP_005336331.1    Uniprot ID   A0A0T6N7F3
Organism   Aeromonas veronii strain AV066     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2400466..2411905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK06_RS11350 (QPK06_11350) mlaF 2401043..2401843 (-) 801 WP_005336343.1 phospholipid ABC transporter ATP-binding protein MlaF -
  QPK06_RS11355 (QPK06_11355) - 2402051..2403046 (+) 996 WP_058057518.1 KpsF/GutQ family sugar-phosphate isomerase -
  QPK06_RS11360 (QPK06_11360) kdsC 2403046..2403600 (+) 555 WP_101530526.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  QPK06_RS11365 (QPK06_11365) lptC 2403597..2404157 (+) 561 WP_005336338.1 LPS export ABC transporter periplasmic protein LptC -
  QPK06_RS11370 (QPK06_11370) lptA 2404144..2404671 (+) 528 WP_040068817.1 lipopolysaccharide transport periplasmic protein LptA -
  QPK06_RS11375 (QPK06_11375) lptB 2404675..2405400 (+) 726 WP_005336333.1 LPS export ABC transporter ATP-binding protein -
  QPK06_RS11380 (QPK06_11380) rpoN/rpoN1 2405466..2406905 (+) 1440 WP_005336331.1 RNA polymerase factor sigma-54 Machinery gene
  QPK06_RS11385 (QPK06_11385) hpf 2406926..2407213 (+) 288 WP_005336323.1 ribosome hibernation promoting factor -
  QPK06_RS11390 (QPK06_11390) ptsN 2407216..2407662 (+) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QPK06_RS11395 (QPK06_11395) rapZ 2407708..2408574 (+) 867 WP_139742551.1 RNase adapter RapZ -
  QPK06_RS11400 (QPK06_11400) npr 2408595..2408867 (+) 273 WP_005336318.1 PTS phosphocarrier protein NPr -
  QPK06_RS11405 (QPK06_11405) - 2408885..2410789 (-) 1905 WP_139742550.1 PRD domain-containing protein -
  QPK06_RS11410 (QPK06_11410) - 2410897..2411637 (-) 741 WP_139742549.1 KDGP aldolase family protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53701.64 Da        Isoelectric Point: 4.3442

>NTDB_id=838926 QPK06_RS11380 WP_005336331.1 2405466..2406905(+) (rpoN/rpoN1) [Aeromonas veronii strain AV066]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVALED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMELLGNRDYRTLARK
TKLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=838926 QPK06_RS11380 WP_005336331.1 2405466..2406905(+) (rpoN/rpoN1) [Aeromonas veronii strain AV066]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCGCCGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCCCAAGAGCAGATGCCG
GACGAGTTGCCGGTGGATACCACCTGGGACGAGGTTTACTCTGCCGGCACCGCCCAGAGCGCGGGCCCCATCCATGATGG
GGAAGATAGCGTCTATCAGGGTGAAACCACCGAAAACCTGCAGGATTATCTGCTGTGGCAGATGCGGCTCACACCGTTCA
GCGATGTGGATGCCGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACCGTTGCGCTGGAGGAT
ATCCAGGCTGCCGTCACCAGCGATGACGTAGAGGTGGAGCTCGATGAGGTCGAGGCGGTACTCAAGCGGGTGCAGCACTT
CGATCCAGTCGGCATTGCTGCCCGTTCTGTGCAGGAGTGTTTGCTGATCCAGCTGGATCAGTATGACCCGCAGACCCCCT
GGCTCAATGAGGCCAAGGAGGTGATCCTCGAGCACATGGAGCTGCTCGGCAACCGGGATTACCGCACCCTCGCCCGCAAG
ACAAAACTCAAAGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGCTGGAGCCGCGCCCCGGCAATGGTATCAT
CCAGAGCGACTCCCAGTACGTGATCCCCGACGTCTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTCGAGCTCAATCCCG
ACTCCGCCCCCCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCTCGCAACGCCCGCAGCAGCACCGACACCCAGTTT
ATTCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGTCTGGAAAGTCGCAATGACACCCTGCTGAAAGTGGCCAG
TTGCATTGTCGAGCAGCAACAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAATGACATCGCCG
AAGCGGTAGAGATGCATGAGTCGACCATCTCCCGGGTGACGACCCAGAAGTACATGCATACCCCTCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6N7F3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.988

100

0.491