Detailed information NTG0838908

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: QPR36_RS17350
• Genome accession: NZ_CP126577
• Coordinates: 3552271..3553416 (+)
• Length: 381 a.a.
• NCBI ID: WP_017418708.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain 411
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3547271..3558416

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QPR36_RS17330 (QPR36_17330)	-	3547745..3548461 (-)	717	WP_003151075.1	Crp/Fnr family transcriptional regulator	-
QPR36_RS17335 (QPR36_17335)	narK	3548559..3549749 (-)	1191	WP_003151073.1	nitrate transporter NarK	-
QPR36_RS17340 (QPR36_17340)	argS	3549884..3551554 (-)	1671	WP_003151071.1	arginine--tRNA ligase	-
QPR36_RS17345 (QPR36_17345)	-	3551551..3551979 (-)	429	WP_003151069.1	DUF1934 family protein	-
QPR36_RS17350 (QPR36_17350)	rapF	3552271..3553416 (+)	1146	WP_017418708.1	tetratricopeptide repeat protein	Regulator
QPR36_RS17355 (QPR36_17355)	-	3553400..3553519 (+)	120	WP_131242041.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
QPR36_RS17360 (QPR36_17360)	speB	3553642..3554514 (-)	873	WP_003151054.1	agmatinase	-
QPR36_RS17365 (QPR36_17365)	speE	3554574..3555404 (-)	831	WP_003151052.1	spermidine synthase	-
QPR36_RS17370 (QPR36_17370)	-	3555604..3557676 (+)	2073	WP_095318311.1	transglycosylase domain-containing protein	-
QPR36_RS17375 (QPR36_17375)	-	3557700..3558131 (-)	432	WP_103695198.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45782.29 Da
• Isoelectric Point: 5.0722

>NTDB_id=838908 QPR36_RS17350 WP_017418708.1 3552271..3553416(+) (rapF) [Bacillus velezensis strain 411]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEEDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=838908 QPR36_RS17350 WP_017418708.1 3552271..3553416(+) (rapF) [Bacillus velezensis strain 411]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGAAGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTACGCGCGGCAGGCTTATTTAATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACGCAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.341	100	0.703
rapC	Bacillus subtilis subsp. subtilis str. 168	53.421	99.738	0.533