Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   VDS58_RS06255 Genome accession   NZ_CP141997
Coordinates   1180799..1181377 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   P40396
Organism   Bacillus subtilis strain PM0031     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1175799..1186377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS06235 (VDS58_06235) comW 1176167..1177696 (-) 1530 WP_049140685.1 FAD-dependent oxidoreductase -
  VDS58_RS06240 (VDS58_06240) yhxC 1177808..1178665 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  VDS58_RS06245 (VDS58_06245) - 1178794..1180146 (+) 1353 WP_014478984.1 IS1182 family transposase -
  VDS58_RS06250 (VDS58_06250) yhzC 1180273..1180506 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  VDS58_RS06255 (VDS58_06255) comK 1180799..1181377 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  VDS58_RS06260 (VDS58_06260) yhxD 1181422..1182321 (-) 900 WP_041851019.1 SDR family oxidoreductase -
  VDS58_RS06265 (VDS58_06265) yhjA 1182538..1182807 (+) 270 WP_021479615.1 excalibur calcium-binding domain-containing protein -
  VDS58_RS06270 (VDS58_06270) yhjB 1182850..1184319 (-) 1470 WP_032725349.1 sodium:solute symporter family protein -
  VDS58_RS06275 (VDS58_06275) yhjC 1184316..1184516 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  VDS58_RS06280 (VDS58_06280) - 1184715..1185086 (-) 372 WP_014476361.1 hypothetical protein -
  VDS58_RS06285 (VDS58_06285) yhjE 1185238..1185861 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  VDS58_RS06290 (VDS58_06290) lepB 1185863..1186369 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=838889 VDS58_RS06255 WP_003245329.1 1180799..1181377(+) (comK) [Bacillus subtilis strain PM0031]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=838889 VDS58_RS06255 WP_003245329.1 1180799..1181377(+) (comK) [Bacillus subtilis strain PM0031]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCAGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCACGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterProScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P40396

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1