Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   VDS58_RS05595 Genome accession   NZ_CP141997
Coordinates   1049774..1050946 (+) Length   390 a.a.
NCBI ID   WP_043857176.1    Uniprot ID   -
Organism   Bacillus subtilis strain PM0031     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1044774..1055946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS05575 (VDS58_05575) cwlT 1046639..1047628 (+) 990 WP_043857174.1 bifunctional lytic transglycosylase/C40 family peptidase -
  VDS58_RS05580 (VDS58_05580) - 1047643..1048149 (+) 507 WP_043857175.1 hypothetical protein -
  VDS58_RS05585 (VDS58_05585) - 1048212..1048595 (+) 384 WP_033881966.1 cystatin-like fold lipoprotein -
  VDS58_RS05590 (VDS58_05590) - 1048693..1049481 (+) 789 WP_129137545.1 DUF4145 domain-containing protein -
  VDS58_RS05595 (VDS58_05595) rapF 1049774..1050946 (+) 1173 WP_043857176.1 Rap family tetratricopeptide repeat protein Regulator
  VDS58_RS23500 - 1051269..1051370 (+) 102 Protein_1034 hypothetical protein -
  VDS58_RS05600 (VDS58_05600) - 1051475..1052044 (-) 570 WP_041851042.1 DUF2812 domain-containing protein -
  VDS58_RS05605 (VDS58_05605) - 1052031..1052348 (-) 318 WP_124048246.1 PadR family transcriptional regulator -
  VDS58_RS05610 (VDS58_05610) - 1052739..1053185 (-) 447 WP_129138138.1 hypothetical protein -
  VDS58_RS05615 (VDS58_05615) yhcN 1053335..1053904 (+) 570 WP_015252489.1 YhcN/YlaJ family sporulation lipoprotein -
  VDS58_RS05620 (VDS58_05620) - 1053851..1054033 (-) 183 WP_121526178.1 hypothetical protein -
  VDS58_RS05625 (VDS58_05625) - 1054038..1055390 (-) 1353 WP_014478984.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 390 a.a.        Molecular weight: 46140.63 Da        Isoelectric Point: 5.8726

>NTDB_id=838883 VDS58_RS05595 WP_043857176.1 1049774..1050946(+) (rapF) [Bacillus subtilis strain PM0031]
MRGVLDKDKIPYDVVTKKLNEWYTHIKNDDLEKAKQIKKEVEEDLKKMEESKDALLYYQLLEFRHELLVNYMNSEKTEEL
KSSYLAMKKLEDQGNVTGMLEYYFHFFMGMYEFRRKKLTAAITSYRKAEAKLSEVDDEIEKAEFFFKVSYVYYYMKQTYF
SLNYAYRALEIYQRYDDYFIQRLRCQFVLGGNFIDSLEYEKALDTFMEALKIAEEIKIDYLIGMAHINIGICFDELKDYK
NASSHLKKALDLLEVSDHSFVAKTLFILTHVKIKQGDKESAGVYFQKGHEFVKKTNDAEYNAKFKILEGLYFSNGEYELI
SEAFAYFDSMKMYADLENYAVEVAQFFHRKQDFQRSSEYYMLSVEARNKIKKGEIINETQSGHIGSSGVN

Nucleotide


Download         Length: 1173 bp        

>NTDB_id=838883 VDS58_RS05595 WP_043857176.1 1049774..1050946(+) (rapF) [Bacillus subtilis strain PM0031]
TTGCGAGGTGTTTTAGATAAAGATAAAATTCCATATGATGTAGTTACAAAAAAATTAAACGAATGGTACACCCATATAAA
AAATGATGATCTTGAAAAAGCTAAACAAATAAAAAAAGAAGTTGAAGAAGATCTAAAAAAAATGGAAGAAAGTAAAGATG
CTTTACTATATTATCAATTGCTTGAATTCCGCCACGAATTGTTGGTCAATTACATGAATTCAGAAAAGACAGAAGAGTTG
AAAAGTTCATATCTAGCTATGAAAAAATTGGAGGACCAGGGCAATGTTACTGGAATGTTGGAATATTATTTTCATTTCTT
TATGGGGATGTATGAATTCAGAAGAAAAAAACTAACTGCGGCAATAACTTCATATAGAAAAGCAGAAGCTAAATTAAGTG
AAGTAGATGATGAGATTGAAAAAGCAGAATTCTTTTTTAAAGTATCATATGTTTATTACTATATGAAGCAAACATACTTT
TCGCTTAACTATGCCTATAGAGCTCTTGAAATATATCAAAGGTATGATGATTATTTTATACAGAGATTAAGATGTCAATT
TGTATTAGGTGGAAACTTTATTGACTCCCTAGAATATGAAAAGGCATTGGATACATTTATGGAAGCGTTAAAAATTGCTG
AAGAAATTAAAATTGATTATTTAATTGGGATGGCACACATCAACATAGGTATTTGCTTTGATGAGTTAAAAGATTACAAA
AATGCATCAAGTCATCTAAAAAAGGCGTTGGATTTGTTAGAGGTTAGCGATCACAGTTTTGTTGCGAAAACTCTTTTTAT
TTTAACACATGTAAAGATCAAGCAAGGTGACAAAGAATCAGCTGGTGTCTATTTTCAAAAAGGACATGAGTTCGTAAAAA
AAACAAATGACGCTGAATATAATGCTAAATTTAAAATATTAGAAGGACTTTATTTTTCAAATGGTGAATATGAATTGATT
AGTGAGGCTTTTGCATATTTTGATTCAATGAAAATGTATGCAGATTTAGAGAACTATGCTGTTGAAGTGGCGCAATTTTT
TCACCGAAAACAGGATTTTCAACGCTCAAGTGAATATTATATGTTGAGTGTTGAAGCAAGAAACAAAATTAAAAAAGGAG
AGATTATTAATGAAACTCAGTCGGGTCATATTGGCAGTAGCGGTGTTAACTAG

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(9-69)

Tetratricopeptide repeat (TPR_12)

(198-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

38.095

96.923

0.369
  rapC Bacillus subtilis subsp. subtilis str. 168

37.302

96.923

0.362