Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   QPR36_RS11335 Genome accession   NZ_CP126577
Coordinates   2393113..2393913 (-) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus velezensis strain 411     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2388113..2398913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPR36_RS11305 (QPR36_11305) - 2388660..2389292 (+) 633 WP_014418348.1 helix-turn-helix domain-containing protein -
  QPR36_RS11310 (QPR36_11310) - 2389583..2389720 (+) 138 WP_014470646.1 hypothetical protein -
  QPR36_RS11315 (QPR36_11315) - 2389814..2390932 (+) 1119 WP_024085589.1 NADH-dependent flavin oxidoreductase -
  QPR36_RS11320 (QPR36_11320) - 2391058..2391270 (+) 213 WP_024085590.1 spore germination protein -
  QPR36_RS11325 (QPR36_11325) - 2391396..2391608 (+) 213 WP_014305392.1 spore germination protein -
  QPR36_RS11330 (QPR36_11330) alr 2391783..2392964 (+) 1182 WP_025852858.1 alanine racemase -
  QPR36_RS11335 (QPR36_11335) spo0A 2393113..2393913 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  QPR36_RS11340 (QPR36_11340) spoIVB 2394194..2395474 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  QPR36_RS11345 (QPR36_11345) recN 2395638..2397368 (-) 1731 WP_057080489.1 DNA repair protein RecN Machinery gene
  QPR36_RS11350 (QPR36_11350) argR 2397400..2397849 (-) 450 WP_003153173.1 transcriptional regulator ArgR -
  QPR36_RS11355 (QPR36_11355) - 2397946..2398791 (-) 846 WP_003153172.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=838873 QPR36_RS11335 WP_003153177.1 2393113..2393913(-) (spo0A) [Bacillus velezensis strain 411]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=838873 QPR36_RS11335 WP_003153177.1 2393113..2393913(-) (spo0A) [Bacillus velezensis strain 411]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TGTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGTGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCATCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCCC
CGTCTGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAACTCAGAGTTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97