Detailed information NTG0838864

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: VDS58_RS01670
• Genome accession: NZ_CP141997
• Coordinates: 307609..308730 (+)
• Length: 373 a.a.
• NCBI ID: WP_069837225.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain PM0031
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 302609..313730

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VDS58_RS01645 (VDS58_01645)	ycdA	302614..303678 (-)	1065	WP_260665518.1	DUF4352 domain-containing protein	-
VDS58_RS01650 (VDS58_01650)	-	303701..303832 (-)	132	WP_003246334.1	hypothetical protein	-
VDS58_RS01655 (VDS58_01655)	ycdB	304006..305427 (+)	1422	WP_121549293.1	YcdB/YcdC domain-containing protein	-
VDS58_RS01660 (VDS58_01660)	ycdC	305614..306975 (+)	1362	WP_041340180.1	YcdB/YcdC domain-containing protein	-
VDS58_RS01665 (VDS58_01665)	cwlK	306983..307486 (-)	504	WP_017695036.1	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
VDS58_RS01670 (VDS58_01670)	rapF	307609..308730 (+)	1122	WP_069837225.1	response regulator aspartate phosphatase RapJ	Regulator
VDS58_RS01675 (VDS58_01675)	ycdF	308837..309613 (+)	777	WP_095843457.1	SDR family oxidoreductase	-
VDS58_RS01680 (VDS58_01680)	ycdG	309637..311326 (+)	1690	Protein_286	glycoside hydrolase family 13 protein	-
VDS58_RS01685 (VDS58_01685)	znuA	311514..312473 (+)	960	WP_029317219.1	metal ABC transporter substrate-binding protein	-
VDS58_RS01690 (VDS58_01690)	znuC	312528..313223 (+)	696	WP_014475714.1	zinc ABC transporter ATP-binding protein ZnuC	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44354.20 Da
• Isoelectric Point: 4.8344

>NTDB_id=838864 VDS58_RS01670 WP_069837225.1 307609..308730(+) (rapF) [Bacillus subtilis strain PM0031]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALDHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
GYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAAEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGSGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLLNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=838864 VDS58_RS01670 WP_069837225.1 307609..308730(+) (rapF) [Bacillus subtilis strain PM0031]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTAAAGCAGGAGATTGAATACGATTTAGAAGATATGGAAGAGAACCAGGACTTGCTTTTATATTTTT
CTTTGATGGAATTCCGGCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGACACCAAGCCTCCGTTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTACTGGAATACTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATCGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTATCACATCAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAGCTGTACGGTCGCCGCCGGGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACCCACTTGTGCAGCGCTTTAGATCATGCCAGGCAGCTTG
AAGAAGCGTACATGATCGCCGCTGCCTATTATAATGTCGGACACTGTAAGTACAGTCTGGGTGACTACAAAGAAGCGGAG
GGCTATTTCAAAACAGCCGCCGCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTCACTGACCCA
TATCTACTGTAAAGAGGGAAAATACGACAAGGCAGCAGAGGCGTATGATCGCGGGATAAAGAGCGCGGCTGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAACTGTATCTTGGAAGCGGCGACCTGAACGTGCTTACAGAATGC
TTTGACCTGCTGGAATCCAGGCAGCTTCTTGCCGACGCCGAAGATCTGCTGCATGATACAGCGGAACGTTTCAATCAGCT
GGAACATTACGAGTCCGCCGCTTTCTTTTACCGCAGGCTGCTGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (219-287)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405