Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   VDS58_RS00330 Genome accession   NZ_CP141997
Coordinates   59662..59892 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain PM0031     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54662..64892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS00300 (VDS58_00300) ridA 54826..55203 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  VDS58_RS00305 (VDS58_00305) spoVG 55398..55691 (+) 294 WP_003218346.1 septation regulator SpoVG -
  VDS58_RS00310 (VDS58_00310) glmU 55884..57254 (+) 1371 WP_017696375.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  VDS58_RS00315 (VDS58_00315) prsS 57277..58230 (+) 954 WP_069837180.1 ribose-phosphate diphosphokinase -
  VDS58_RS00320 (VDS58_00320) rplYB 58315..58929 (+) 615 WP_069963938.1 50S ribosomal protein L25/general stress protein Ctc -
  VDS58_RS00325 (VDS58_00325) pth 59036..59602 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  VDS58_RS00330 (VDS58_00330) subA/fin 59662..59892 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  VDS58_RS00335 (VDS58_00335) mfd 59962..63495 (+) 3534 WP_003243453.1 transcription-repair coupling factor -
  VDS58_RS00340 (VDS58_00340) spoVT 63631..64167 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=838858 VDS58_RS00330 WP_003243417.1 59662..59892(+) (subA/fin) [Bacillus subtilis strain PM0031]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=838858 VDS58_RS00330 WP_003243417.1 59662..59892(+) (subA/fin) [Bacillus subtilis strain PM0031]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1