Detailed information NTG0838842

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: QPR36_RS01980
• Genome accession: NZ_CP126577
• Coordinates: 419828..420976 (+)
• Length: 382 a.a.
• NCBI ID: WP_003156336.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain 411
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 414828..425976

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QPR36_RS01960 (QPR36_01960)	-	415225..415908 (-)	684	WP_015388709.1	ABC transporter ATP-binding protein	-
QPR36_RS01965 (QPR36_01965)	-	415923..417359 (-)	1437	WP_302241743.1	ABC transporter permease	-
QPR36_RS01970 (QPR36_01970)	-	417572..418255 (+)	684	WP_015388707.1	response regulator transcription factor	-
QPR36_RS01975 (QPR36_01975)	-	418242..419675 (+)	1434	WP_161625271.1	HAMP domain-containing sensor histidine kinase	-
QPR36_RS01980 (QPR36_01980)	rapC	419828..420976 (+)	1149	WP_003156336.1	Rap family tetratricopeptide repeat protein	Regulator
QPR36_RS01985 (QPR36_01985)	phrC	420960..421079 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
QPR36_RS01990 (QPR36_01990)	-	421229..421324 (-)	96	WP_012116800.1	YjcZ family sporulation protein	-
QPR36_RS01995 (QPR36_01995)	-	421419..422783 (-)	1365	WP_073982003.1	aspartate kinase	-
QPR36_RS02000 (QPR36_02000)	ceuB	423198..424151 (+)	954	WP_003156332.1	ABC transporter permease	Machinery gene
QPR36_RS02005 (QPR36_02005)	-	424141..425088 (+)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
QPR36_RS02010 (QPR36_02010)	-	425082..425840 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45521.82 Da
• Isoelectric Point: 5.0732

>NTDB_id=838842 QPR36_RS01980 WP_003156336.1 419828..420976(+) (rapC) [Bacillus velezensis strain 411]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=838842 QPR36_RS01980 WP_003156336.1 419828..420976(+) (rapC) [Bacillus velezensis strain 411]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTCGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
CCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568