Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QPR36_RS01790 Genome accession   NZ_CP126577
Coordinates   361977..362414 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain 411     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 356977..367414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPR36_RS01755 (QPR36_01755) - 357602..357763 (-) 162 Protein_305 hypothetical protein -
  QPR36_RS01760 (QPR36_01760) - 357880..359082 (+) 1203 WP_057080005.1 GTP-binding protein -
  QPR36_RS01765 (QPR36_01765) - 359147..360283 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  QPR36_RS01770 (QPR36_01770) - 360298..360732 (+) 435 WP_057080003.1 RDD family protein -
  QPR36_RS01775 (QPR36_01775) - 360804..361124 (+) 321 WP_015388719.1 YckD family protein -
  QPR36_RS19035 - 361228..361344 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  QPR36_RS01780 (QPR36_01780) - 361343..361538 (+) 196 Protein_311 family 1 glycosylhydrolase -
  QPR36_RS01785 (QPR36_01785) nin/comJ 361557..361955 (-) 399 WP_014304317.1 competence protein ComJ Regulator
  QPR36_RS01790 (QPR36_01790) nucA/comI 361977..362414 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QPR36_RS01795 (QPR36_01795) hxlB 362773..363330 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  QPR36_RS01800 (QPR36_01800) hxlA 363327..363962 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  QPR36_RS01805 (QPR36_01805) - 364194..364556 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=838840 QPR36_RS01790 WP_003156588.1 361977..362414(-) (nucA/comI) [Bacillus velezensis strain 411]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=838840 QPR36_RS01790 WP_003156588.1 361977..362414(-) (nucA/comI) [Bacillus velezensis strain 411]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCAATAAAAGAAGGGCATTCCAGCATTTGCACCATTGATAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641