Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QPK28_RS14345 Genome accession   NZ_CP126576
Coordinates   2708702..2709472 (-) Length   256 a.a.
NCBI ID   WP_003183624.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CQMB003     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2703702..2714472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS14325 - 2703777..2704589 (-) 813 WP_003183615.1 pyruvate, water dikinase regulatory protein -
  QPK28_RS14330 - 2704615..2705253 (-) 639 WP_025804968.1 helix-turn-helix transcriptional regulator -
  QPK28_RS14335 glyS 2705451..2707490 (-) 2040 WP_009327872.1 glycine--tRNA ligase subunit beta -
  QPK28_RS14340 glyQ 2707483..2708370 (-) 888 WP_003183621.1 glycine--tRNA ligase subunit alpha -
  QPK28_RS14345 recO 2708702..2709472 (-) 771 WP_003183624.1 DNA repair protein RecO Machinery gene
  QPK28_RS14350 - 2709510..2709653 (-) 144 WP_003183626.1 YqzL family protein -
  QPK28_RS14355 era 2709815..2710720 (-) 906 WP_009327871.1 GTPase Era -
  QPK28_RS14360 - 2710701..2711111 (-) 411 WP_003183631.1 cytidine deaminase -
  QPK28_RS14365 - 2711243..2711623 (-) 381 WP_003183633.1 diacylglycerol kinase family protein -
  QPK28_RS14370 ybeY 2711601..2712077 (-) 477 WP_003183635.1 rRNA maturation RNase YbeY -
  QPK28_RS14375 - 2712074..2714128 (-) 2055 WP_237562993.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29473.12 Da        Isoelectric Point: 8.5644

>NTDB_id=838806 QPK28_RS14345 WP_003183624.1 2708702..2709472(-) (recO) [Bacillus licheniformis strain CQMB003]
MLTKCEGIVLRTNDYGETNKIITLLTREHGKIGVLARGAKKPNSRLSAISQPFLYASFLFRKSSGLGTLEQGEMIESMRN
IREDLFLTAYAAYIAELIDKGTEEKKPNPFLFELLLQSMRRLNDGTDPDIIANLIEVKMLSVMGLYPELDECVHCKSKDG
TFHFSIRDNGFICHRCFAKDPYRIPLSPASARLLRLFFYFDLSRLGNVSVKQETKDELKRVIQTYYDEYSGIYLKSRRFM
EQMDNMKKMLGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=838806 QPK28_RS14345 WP_003183624.1 2708702..2709472(-) (recO) [Bacillus licheniformis strain CQMB003]
ATGCTGACGAAATGTGAAGGTATCGTCCTTCGTACAAACGACTATGGTGAAACAAATAAGATCATTACGCTATTGACGAG
AGAACACGGGAAAATCGGTGTGCTGGCAAGGGGCGCCAAAAAGCCGAACAGCCGCTTGTCAGCGATTTCCCAGCCGTTCC
TTTATGCATCTTTTTTATTCCGCAAATCATCCGGCCTCGGCACATTGGAGCAGGGCGAGATGATCGAAAGCATGAGGAAT
ATCCGCGAGGATCTGTTTTTAACAGCTTACGCGGCCTACATCGCTGAATTAATCGACAAGGGAACGGAGGAAAAGAAACC
GAATCCGTTTTTATTTGAGCTGCTGCTTCAGTCAATGAGGAGGCTGAATGACGGTACAGATCCCGACATTATCGCCAACC
TCATCGAAGTCAAAATGCTCAGCGTGATGGGGCTGTATCCGGAGCTGGATGAATGTGTGCACTGCAAAAGCAAAGACGGC
ACATTTCATTTTTCGATCCGCGACAACGGCTTTATCTGCCACCGCTGTTTTGCGAAAGATCCATACAGGATACCGCTGTC
TCCCGCATCCGCCAGGCTGTTGAGACTGTTTTTTTATTTTGACCTGTCAAGGCTCGGAAATGTCTCGGTCAAACAGGAGA
CGAAGGATGAGCTGAAAAGGGTTATTCAGACGTACTATGACGAGTACTCAGGGATCTACCTGAAATCGCGGCGCTTCATG
GAACAAATGGACAATATGAAAAAGATGCTGGGCGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

78.125

100

0.781