Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QPK28_RS13750 Genome accession   NZ_CP126576
Coordinates   2606984..2608714 (-) Length   576 a.a.
NCBI ID   WP_003183366.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CQMB003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2601984..2613714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS13730 - 2603246..2603629 (-) 384 WP_003183357.1 serine acetyltransferase -
  QPK28_RS13735 - 2603759..2604055 (-) 297 WP_003183359.1 antimicrobial peptide LCI -
  QPK28_RS13740 spo0A 2604428..2605228 (-) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  QPK28_RS13745 spoIVB 2605518..2606801 (-) 1284 WP_011198109.1 SpoIVB peptidase -
  QPK28_RS13750 recN 2606984..2608714 (-) 1731 WP_003183366.1 DNA repair protein RecN Machinery gene
  QPK28_RS13755 argR 2608746..2609195 (-) 450 WP_003183369.1 transcriptional regulator ArgR -
  QPK28_RS13760 - 2609361..2610206 (-) 846 WP_003183371.1 TlyA family RNA methyltransferase -
  QPK28_RS13765 dxs 2610203..2612104 (-) 1902 WP_003183372.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QPK28_RS13770 - 2612338..2613228 (-) 891 WP_003183374.1 polyprenyl synthetase family protein -
  QPK28_RS13775 - 2613218..2613478 (-) 261 WP_011198110.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64524.32 Da        Isoelectric Point: 4.7726

>NTDB_id=838800 QPK28_RS13750 WP_003183366.1 2606984..2608714(-) (recN) [Bacillus licheniformis strain CQMB003]
MLAELSIKNFAIIEELTVSFEKGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEYVRYGEKRAELEGLFLLDGGHPVFDLC
TELGIEASDDMIVMRRDINANGKSICRVNGKLVTIAALREVGRLLLDIHGQHDNQLLMEDEHHLQLLDRFAGEEIENALK
AYQEVYSRYMDVMKKVKELSESEQEMAHRLDLIQFQLDEIESANLEPKEDELLQEERRQIANFEKIYEALQNAYNALRNE
QAGLDWVGMASSELENVSGINEGLNKVSESVANAYYILEDSTFQIRNMLDELEYDPERLDYIESRLNEIKQLKRKYGATV
EDIQAYSAKIEEEIDRIENRDSHLQALKSRLESIGKDVAIEAANVSEIRKKWAEKLAKQIQQELKDLYMEKSTFDTEFHV
KKAERDDDAPVVNGMPVQLTKHGIDTVRFLISTNTGEPLKSLSKVASGGELSRIMLAMKSIFSAQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHRVSIGSQVLCITHLPQVAAMADTHLLITKQSKDGRTTTSVTPLSKQEKIAEIGRMIAGVEVTDLTKR
HAKELLNQAKLVKTSG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=838800 QPK28_RS13750 WP_003183366.1 2606984..2608714(-) (recN) [Bacillus licheniformis strain CQMB003]
TTGTTAGCTGAATTATCGATCAAAAACTTTGCGATTATCGAAGAATTAACCGTTTCTTTTGAAAAAGGGCTGACGGTTCT
AACCGGTGAAACAGGTGCCGGAAAATCGATCATCATCGACGCCGTCTCTTTGCTTGTCGGAGGCCGCGGATCGTCCGAAT
ATGTCAGGTATGGCGAAAAAAGGGCCGAATTGGAAGGGCTTTTCCTCCTTGACGGCGGCCATCCGGTTTTTGATTTGTGC
ACAGAGCTGGGGATTGAAGCCTCGGACGACATGATCGTCATGAGAAGAGATATTAACGCAAACGGCAAAAGCATCTGCCG
CGTCAATGGAAAACTTGTCACCATTGCCGCATTGCGGGAAGTCGGCAGACTGCTGCTTGACATTCACGGGCAGCACGACA
ATCAGCTGCTGATGGAGGACGAGCACCATCTTCAGCTTCTGGACAGGTTCGCAGGAGAAGAAATCGAGAATGCTTTAAAA
GCGTATCAGGAAGTTTACAGCCGCTACATGGATGTCATGAAGAAGGTGAAAGAGCTTTCTGAAAGCGAGCAGGAAATGGC
TCACAGGCTCGATTTAATACAGTTCCAGCTTGACGAAATCGAATCAGCAAACCTTGAGCCGAAAGAGGACGAGCTTCTTC
AGGAAGAGCGCCGTCAAATTGCAAATTTCGAAAAAATATACGAAGCGCTGCAAAATGCCTATAATGCGCTTCGCAATGAG
CAGGCCGGGCTTGACTGGGTCGGCATGGCTTCAAGCGAGCTTGAAAACGTCTCAGGCATTAATGAAGGGCTCAATAAAGT
ATCTGAATCGGTAGCCAACGCTTACTACATTCTCGAAGATTCAACCTTTCAGATCAGAAATATGCTGGATGAACTCGAAT
ACGACCCCGAGCGCCTCGATTATATCGAATCGCGTTTAAACGAAATCAAACAGCTGAAACGCAAATACGGCGCTACTGTC
GAAGACATCCAAGCTTATTCGGCTAAGATAGAGGAAGAAATCGACCGGATCGAAAACCGGGACAGCCACTTGCAGGCTTT
AAAATCACGACTCGAATCAATCGGCAAGGATGTGGCGATTGAAGCAGCCAATGTGTCCGAAATCAGAAAAAAATGGGCGG
AAAAGCTGGCCAAACAGATTCAGCAGGAATTGAAAGATCTGTATATGGAAAAATCGACATTTGATACGGAATTTCATGTG
AAAAAAGCGGAACGGGATGATGATGCACCCGTCGTCAACGGAATGCCTGTTCAGCTCACAAAGCACGGCATTGACACCGT
TCGTTTCCTGATCTCCACAAACACGGGAGAACCGCTTAAATCCTTGTCAAAGGTTGCTTCAGGAGGAGAGCTCTCAAGAA
TCATGCTGGCGATGAAAAGCATTTTCTCCGCTCAGCAGGATGTTACATCGATCATTTTCGATGAAGTGGACACTGGTGTA
AGCGGAAGAGTCGCGCAGGCGATCGCTGAAAAAATACACCGCGTCTCTATCGGCTCTCAAGTTTTATGCATTACCCACTT
GCCGCAGGTGGCCGCGATGGCTGACACCCACCTTTTGATCACGAAACAGTCGAAAGACGGGAGAACAACAACAAGCGTCA
CACCTTTGTCAAAACAGGAAAAAATAGCGGAAATCGGCCGGATGATTGCCGGCGTTGAAGTAACGGATTTGACGAAGCGC
CATGCGAAAGAACTTTTAAATCAAGCTAAGCTAGTCAAAACCAGCGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

81.25

100

0.813