Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QPK28_RS12630 Genome accession   NZ_CP126576
Coordinates   2403766..2404362 (+) Length   198 a.a.
NCBI ID   WP_003182896.1    Uniprot ID   A0A2U9VM47
Organism   Bacillus licheniformis strain CQMB003     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2398766..2409362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS12590 - 2399784..2400290 (-) 507 WP_003182879.1 PTS glucose transporter subunit IIA -
  QPK28_RS12595 - 2400466..2400885 (+) 420 WP_003182880.1 hypothetical protein -
  QPK28_RS12600 - 2400904..2401347 (-) 444 WP_003182882.1 YppG family protein -
  QPK28_RS12605 - 2401527..2401727 (+) 201 WP_011198064.1 YppF family protein -
  QPK28_RS12610 - 2401760..2402131 (-) 372 WP_003182887.1 YppE family protein -
  QPK28_RS12615 - 2402189..2402416 (-) 228 WP_003182890.1 YppD family protein -
  QPK28_RS12620 sspM 2402616..2402720 (+) 105 WP_009328007.1 acid-soluble spore protein SspM -
  QPK28_RS12625 - 2402753..2403685 (-) 933 WP_026080760.1 DUF2515 domain-containing protein -
  QPK28_RS12630 recU 2403766..2404362 (+) 597 WP_003182896.1 Holliday junction resolvase RecU Machinery gene
  QPK28_RS12635 - 2404420..2407107 (+) 2688 WP_009328005.1 penicillin-binding protein 1A -
  QPK28_RS12640 - 2407128..2407592 (-) 465 WP_202604373.1 YpoC family protein -
  QPK28_RS12645 nth 2407628..2408290 (-) 663 WP_003182903.1 endonuclease III -
  QPK28_RS12650 - 2408307..2409005 (-) 699 WP_003182905.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23143.26 Da        Isoelectric Point: 9.3852

>NTDB_id=838798 QPK28_RS12630 WP_003182896.1 2403766..2404362(+) (recU) [Bacillus licheniformis strain CQMB003]
MIRYPNGKSYQPKTAASSLQKKPSYSNRGMTLEDDLNETNMYYQSHSIAVIHKKPTPVQIVQVDYPKRSAAVIKEAYFKQ
SSTTDYNGVYKGRYIDFEAKETKSRTSFPLQNFHDHQIEHMKQVVAQDGICFVIISAFEEIYFLEAEKLFYFWERKKQNG
RKSIRKDELQEAAHPISLGYSPRIDYIKIIDQLYFSPS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=838798 QPK28_RS12630 WP_003182896.1 2403766..2404362(+) (recU) [Bacillus licheniformis strain CQMB003]
GTGATTCGTTACCCGAACGGCAAATCCTATCAGCCGAAAACAGCTGCCTCATCCTTGCAAAAGAAGCCGTCGTATTCCAA
TCGCGGCATGACCCTCGAAGATGACCTGAATGAAACGAATATGTATTATCAATCTCATTCGATTGCGGTCATCCATAAAA
AACCGACACCTGTACAGATTGTCCAGGTCGATTATCCGAAGCGAAGCGCTGCGGTTATCAAAGAAGCATATTTCAAGCAG
TCGTCAACTACTGATTATAATGGGGTTTATAAAGGCCGCTACATCGATTTTGAAGCGAAAGAAACAAAGAGCCGAACCTC
GTTCCCGCTTCAGAATTTCCACGATCATCAGATCGAGCATATGAAGCAGGTTGTGGCGCAAGACGGCATTTGTTTTGTTA
TCATATCCGCTTTTGAAGAAATTTATTTTTTGGAAGCAGAAAAATTATTTTATTTCTGGGAGCGGAAAAAGCAAAACGGC
AGAAAATCGATCCGAAAAGACGAGCTTCAGGAAGCCGCTCACCCCATTTCACTTGGATACTCGCCAAGAATTGATTATAT
TAAGATTATTGATCAGTTGTATTTTTCGCCATCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(28-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U9VM47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

82.09

100

0.833