Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QPK28_RS10930 Genome accession   NZ_CP126576
Coordinates   2070209..2070637 (+) Length   142 a.a.
NCBI ID   WP_003182220.1    Uniprot ID   A0A1Y0YFI7
Organism   Bacillus licheniformis strain CQMB003     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2065209..2075637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS10900 - 2065392..2066000 (+) 609 WP_009328237.1 flavin reductase family protein -
  QPK28_RS10905 wrbA 2066201..2066812 (+) 612 WP_003182210.1 NAD(P)H:quinone oxidoreductase -
  QPK28_RS10910 - 2067133..2067273 (+) 141 WP_003182211.1 hypothetical protein -
  QPK28_RS10915 - 2067266..2068099 (+) 834 WP_003182213.1 prohibitin family protein -
  QPK28_RS10920 - 2068190..2068951 (+) 762 WP_003182215.1 hypothetical protein -
  QPK28_RS10925 - 2069011..2069850 (+) 840 WP_003182218.1 thymidylate synthase -
  QPK28_RS10930 nucA/comI 2070209..2070637 (+) 429 WP_003182220.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QPK28_RS10935 lexA 2070833..2071456 (-) 624 WP_003182222.1 transcriptional repressor LexA -
  QPK28_RS10940 yneA 2071609..2071920 (+) 312 WP_003182225.1 cell division suppressor protein YneA -
  QPK28_RS10945 - 2071939..2072586 (+) 648 WP_003182227.1 recombinase family protein -
  QPK28_RS10950 - 2072652..2072885 (+) 234 WP_003182231.1 DUF896 domain-containing protein -
  QPK28_RS10955 tkt 2073052..2075055 (+) 2004 WP_009328229.1 transketolase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15332.29 Da        Isoelectric Point: 7.8987

>NTDB_id=838797 QPK28_RS10930 WP_003182220.1 2070209..2070637(+) (nucA/comI) [Bacillus licheniformis strain CQMB003]
MIKKWAVHLLFSALVLLGLSGGAAYSPQHAEGAARYDDILYFPASRYPETGAHISDAIKAGHSDVCTIERSGADKRRQES
LKGIPTKPGFDRDEWPMAMCEEGGKGASVRYVSSSDNRGAGSWVGNRLSGFADGTRILFIVQ

Nucleotide


Download         Length: 429 bp        

>NTDB_id=838797 QPK28_RS10930 WP_003182220.1 2070209..2070637(+) (nucA/comI) [Bacillus licheniformis strain CQMB003]
ATGATCAAAAAATGGGCGGTTCATCTGCTGTTTTCCGCATTGGTACTGCTTGGGCTTTCGGGAGGCGCCGCATATTCTCC
TCAGCATGCCGAAGGTGCTGCAAGGTATGACGACATATTGTATTTTCCGGCATCACGCTATCCCGAAACCGGCGCTCATA
TCAGCGACGCAATCAAAGCGGGGCATTCAGATGTCTGCACGATTGAAAGATCGGGAGCGGATAAGCGCCGCCAGGAATCA
CTGAAGGGGATTCCGACTAAGCCGGGCTTTGACCGTGACGAATGGCCGATGGCCATGTGTGAAGAAGGGGGCAAAGGAGC
GTCTGTCAGATATGTCAGCTCATCGGATAACCGCGGAGCCGGCTCCTGGGTCGGGAACAGGCTGAGCGGTTTCGCCGACG
GGACGAGAATTTTGTTTATCGTTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YFI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.73

88.732

0.521