Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QPK28_RS08975 Genome accession   NZ_CP126576
Coordinates   1744605..1745507 (+) Length   300 a.a.
NCBI ID   WP_003181744.1    Uniprot ID   A0A1Y0YS93
Organism   Bacillus licheniformis strain CQMB003     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1739605..1750507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS08955 - 1740267..1741955 (+) 1689 WP_017474806.1 hypothetical protein -
  QPK28_RS08960 - 1741952..1742233 (+) 282 WP_003181737.1 FlhB-like flagellar biosynthesis protein -
  QPK28_RS08965 sucC 1742410..1743570 (+) 1161 WP_003181739.1 ADP-forming succinate--CoA ligase subunit beta -
  QPK28_RS08970 sucD 1743589..1744491 (+) 903 WP_003181741.1 succinate--CoA ligase subunit alpha -
  QPK28_RS08975 dprA 1744605..1745507 (+) 903 WP_003181744.1 DNA-processing protein DprA Machinery gene
  QPK28_RS08980 topA 1745712..1747787 (+) 2076 WP_003181746.1 type I DNA topoisomerase -
  QPK28_RS08985 trmFO 1747863..1749167 (+) 1305 WP_003181748.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QPK28_RS08990 xerC 1749234..1750148 (+) 915 WP_003181750.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33196.51 Da        Isoelectric Point: 10.2533

>NTDB_id=838789 QPK28_RS08975 WP_003181744.1 1744605..1745507(+) (dprA) [Bacillus licheniformis strain CQMB003]
MNDSSELLILLRLRGTLSPSLLTKWWKQDPSLSLTGEKNHLLTKLSLKRSDLCSIRKLAEQELSNVKRLIRSYEAAGVRM
TAISSPDYPASLKTIHDPPPVLFLKGNKKLLHEQRLIGIVGTRCPSLYGKRAAVQLVRELCKNSWTIVSGLAKGIDGLAH
QESIRSKGRTIGVIAGGFNSIYPREHRQLAGQMAESHLLVSEHPPHIKPQKWHFPMRNRLISGLTEGIVVVQGKEKSGSL
ITAYQALEQGREVFAVPGPIFDANSFGPSRLIQEGAKLVLTIEDILNELPPSNAQYTEPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=838789 QPK28_RS08975 WP_003181744.1 1744605..1745507(+) (dprA) [Bacillus licheniformis strain CQMB003]
ATGAACGACAGCAGCGAGCTTTTGATATTGCTCCGCCTTCGCGGCACACTCTCCCCTTCTCTGCTGACCAAGTGGTGGAA
GCAGGACCCTTCCTTGTCTCTTACGGGCGAAAAAAACCATCTTTTAACGAAGCTTTCATTAAAAAGATCAGACTTGTGCT
CCATACGAAAACTGGCGGAACAAGAACTGTCTAATGTTAAACGGCTCATCCGTTCTTACGAGGCGGCCGGCGTCCGCATG
ACCGCCATATCTTCCCCTGATTATCCAGCCAGCCTGAAAACCATTCATGACCCGCCTCCCGTCCTTTTTTTAAAAGGAAA
CAAAAAACTTCTCCATGAACAAAGACTGATCGGAATCGTCGGAACTCGCTGCCCGTCATTATACGGAAAAAGAGCTGCGG
TCCAGCTTGTCAGGGAGCTTTGCAAAAACAGCTGGACGATCGTCAGCGGTCTTGCAAAAGGAATTGACGGTCTCGCCCAT
CAGGAGAGCATCCGTTCAAAGGGAAGGACAATCGGCGTTATCGCGGGCGGATTCAACAGCATATATCCCCGTGAACATCG
CCAGCTCGCCGGACAAATGGCCGAAAGCCACCTGCTGGTATCAGAGCACCCTCCTCACATTAAACCGCAAAAATGGCATT
TTCCCATGCGAAATCGGCTGATCAGCGGATTAACGGAAGGAATCGTTGTCGTCCAAGGCAAGGAAAAGAGCGGATCGCTC
ATTACAGCATACCAAGCCCTTGAGCAGGGGCGGGAGGTGTTCGCCGTGCCGGGTCCGATCTTTGATGCCAACTCTTTCGG
TCCTTCAAGGCTGATCCAGGAAGGGGCGAAACTCGTATTAACTATTGAAGACATTTTGAACGAACTTCCGCCTTCAAACG
CTCAATATACAGAGCCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YS93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

57.525

99.667

0.573
  dprA Legionella pneumophila strain ERS1305867

39.404

100

0.397