Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   QPK28_RS08025 Genome accession   NZ_CP126576
Coordinates   1556280..1556870 (+) Length   196 a.a.
NCBI ID   WP_003181328.1    Uniprot ID   A0A1Y0YEF8
Organism   Bacillus licheniformis strain CQMB003     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1551280..1561870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS07995 - 1551583..1552038 (+) 456 WP_021837450.1 flavodoxin -
  QPK28_RS08000 dapD 1552144..1552854 (+) 711 WP_003181319.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  QPK28_RS08005 - 1552923..1554047 (+) 1125 WP_003181321.1 N-acetyldiaminopimelate deacetylase -
  QPK28_RS08010 - 1554110..1554355 (+) 246 WP_003181323.1 YkuS family protein -
  QPK28_RS08015 ahpA 1554650..1555192 (+) 543 WP_003181325.1 biofilm-specific peroxidase AhpA -
  QPK28_RS08020 - 1555274..1555732 (+) 459 WP_003181327.1 redoxin domain-containing protein -
  QPK28_RS08025 rok 1556280..1556870 (+) 591 WP_003181328.1 transcriptional regulator Rok Regulator
  QPK28_RS08030 - 1557016..1557972 (-) 957 WP_003181329.1 hypothetical protein -
  QPK28_RS08035 - 1558125..1558712 (+) 588 WP_016886580.1 molybdenum cofactor guanylyltransferase -
  QPK28_RS08040 - 1558818..1559831 (+) 1014 WP_011197943.1 molybdopterin-synthase adenylyltransferase MoeB -
  QPK28_RS08045 glp 1559851..1561143 (+) 1293 WP_003181335.1 gephyrin-like molybdotransferase Glp -
  QPK28_RS08050 mobB 1561110..1561637 (+) 528 WP_003181336.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22665.62 Da        Isoelectric Point: 9.9960

>NTDB_id=838787 QPK28_RS08025 WP_003181328.1 1556280..1556870(+) (rok) [Bacillus licheniformis strain CQMB003]
MFNEREALRLRLEQLNEAEVKVIREYQIERDNIYAKLRELDRPSSFNDTKKDFRPERKTESLPVLAELAAQEMKSYQQQQ
QQQPQASQKNQQQTSPQTSSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPN
MTTFMQSLIKMYPEVKKPYRGQYILEGEISTETEQQ

Nucleotide


Download         Length: 591 bp        

>NTDB_id=838787 QPK28_RS08025 WP_003181328.1 1556280..1556870(+) (rok) [Bacillus licheniformis strain CQMB003]
ATGTTTAACGAGAGGGAAGCATTGCGTTTAAGATTAGAGCAGCTGAACGAGGCTGAAGTTAAGGTGATTAGGGAGTATCA
AATTGAGCGGGATAACATATATGCAAAGCTGCGTGAATTGGATCGTCCATCCAGCTTTAATGATACAAAAAAAGATTTTC
GCCCGGAGCGTAAAACTGAATCTCTCCCTGTTTTAGCTGAATTGGCTGCACAGGAGATGAAGAGCTACCAGCAACAGCAG
CAACAGCAGCCGCAAGCATCTCAAAAGAACCAGCAGCAGACTTCTCCGCAAACCTCCTCACTGCCTGCCGGAATTCCAGA
TGGAACGACAAGGCGCAGAAGGGGTACAGCACGTCCAGGCTCAAAAGCTGCAAAATTGCGTGAAGCGGCGATTAAAACAT
TAAAACGCCATAATGCGGCCATCAAAAGCTCCGAACTTCAAAAAGAAATCGAAAAAGAGAGCGGACTTGAGATCCCTAAT
ATGACAACCTTTATGCAAAGCCTGATTAAAATGTACCCGGAAGTCAAAAAACCATACCGCGGTCAATATATATTAGAGGG
TGAGATTTCTACTGAGACAGAGCAGCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YEF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

83.77

97.449

0.816