Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LLUL007_RS10950 Genome accession   NZ_CP126569
Coordinates   2112192..2113553 (-) Length   453 a.a.
NCBI ID   WP_396425786.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UL007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2107192..2118553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUL007_RS10915 (LLUL007_10980) - 2107293..2107616 (-) 324 WP_011677132.1 DUF1048 domain-containing protein -
  LLUL007_RS10920 (LLUL007_10985) - 2107613..2107951 (-) 339 WP_011677133.1 DUF1048 domain-containing protein -
  LLUL007_RS10925 (LLUL007_10990) - 2107944..2108300 (-) 357 WP_011677134.1 PadR family transcriptional regulator -
  LLUL007_RS10930 (LLUL007_10995) - 2108422..2109051 (-) 630 WP_011677135.1 hypothetical protein -
  LLUL007_RS10935 (LLUL007_11000) - 2109109..2110194 (-) 1086 WP_396425783.1 PIN/TRAM domain-containing protein -
  LLUL007_RS10940 (LLUL007_11005) - 2110461..2111144 (+) 684 WP_396425784.1 YoaK family protein -
  LLUL007_RS10945 (LLUL007_11010) - 2111201..2112037 (+) 837 WP_396425785.1 IS982 family transposase -
  LLUL007_RS10950 (LLUL007_11015) radA 2112192..2113553 (-) 1362 WP_396425786.1 DNA repair protein RadA Machinery gene
  LLUL007_RS10955 (LLUL007_11020) - 2113723..2114736 (-) 1014 WP_396425787.1 glycosyltransferase family 2 protein -
  LLUL007_RS10960 (LLUL007_11025) - 2114718..2115263 (-) 546 WP_011677141.1 HAD-IIIA family hydrolase -
  LLUL007_RS10965 (LLUL007_11030) - 2115260..2115835 (-) 576 WP_011677142.1 SIS domain-containing protein -
  LLUL007_RS10970 (LLUL007_11035) - 2115897..2116691 (-) 795 WP_396425789.1 GHMP kinase -
  LLUL007_RS10975 (LLUL007_11040) - 2116900..2118426 (-) 1527 WP_396425790.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49909.39 Da        Isoelectric Point: 5.2965

>NTDB_id=838743 LLUL007_RS10950 WP_396425786.1 2112192..2113553(-) (radA) [Lactococcus cremoris strain UL007]
MAKKKSSFVCQNCGYKSAKYLGRCPNCGEWSSFVEEVEVQEVKNQRVSMSGERSKPMKLDEVELFDTPRIETDLDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLYVSGEESAQQIKLRAERLGDIDRDFYLYAETNMQSIRAEVE
RLKPNFLIIDSIQTIMTPEIQSTQGSVSQVREVTGELMQIAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
NNTFRILRAVKNRFGSTNEIGIFEMQGHGLVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTIPTMFGNAK
RTTSGLDFNRVSLIMAVLEKRTGLLMQNQDAYLKSAGGVKLDEPAIDLAVAVAVASSYKELPTDARECFIGEIGLTGEIR
RVTRIEQRLNEAAKLGFKKVYAPKNSIVGIDIPEQIKVIGVTTLTECLKLVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=838743 LLUL007_RS10950 WP_396425786.1 2112192..2113553(-) (radA) [Lactococcus cremoris strain UL007]
ATGGCGAAGAAAAAATCATCTTTTGTTTGTCAAAATTGTGGTTATAAATCTGCAAAGTATCTTGGGCGATGCCCAAATTG
TGGAGAGTGGTCCTCTTTTGTTGAAGAAGTTGAAGTACAGGAAGTCAAAAATCAGCGAGTGTCGATGTCTGGTGAACGTT
CAAAACCAATGAAATTAGATGAAGTTGAGCTTTTTGATACACCACGTATTGAAACAGATCTTGACGAATTTAATCGTGTT
TTAGGTGGTGGTGTTGTTCCTGGTTCACTCGTTTTGATTGGTGGAGACCCAGGAATAGGAAAATCTACGTTGCTTTTGCA
AGTATCGACTCAGCTTGCATCAAGAGGACGGGTTCTCTATGTGAGTGGTGAAGAATCTGCTCAACAAATTAAGCTTAGAG
CGGAACGTTTGGGCGATATTGATCGAGATTTTTATCTTTACGCCGAGACTAACATGCAGTCAATTCGTGCTGAAGTTGAA
CGTTTGAAGCCAAATTTTTTGATTATTGATTCGATCCAAACTATTATGACACCTGAAATTCAATCAACTCAAGGCTCTGT
GAGTCAAGTTCGAGAAGTGACAGGTGAACTCATGCAAATTGCCAAAACGAATGATATTGCTACTTTTATCGTTGGTCATG
TGACGAAAGAAGGTCAATTGGCAGGACCAAGAATGCTAGAGCACATGGTTGATACCGTTCTTTATTTTGAAGGAGAAAGA
AATAATACTTTTAGAATTCTTCGAGCAGTTAAAAACCGGTTTGGGTCAACCAATGAAATTGGTATATTCGAAATGCAAGG
GCATGGTTTAGTTGAAGTAACTAATCCTTCTGAGGTTTTCTTGGAAGAGCGATTAGAGGGTTCAACTGGTTCTGCTATTG
TTTGTGCACTCGAAGGGACACGTCCGATATTAGTTGAAATACAGGCTTTAACTATACCAACAATGTTTGGAAATGCTAAG
AGAACAACTTCTGGTTTAGATTTTAATAGAGTGAGCCTGATTATGGCAGTACTTGAAAAACGGACAGGCTTATTGATGCA
AAATCAAGATGCTTACCTTAAATCAGCTGGGGGAGTAAAATTAGATGAGCCAGCCATTGACCTTGCGGTTGCTGTCGCTG
TAGCCTCAAGTTATAAAGAACTTCCGACGGATGCGCGTGAATGTTTTATTGGTGAAATTGGCTTAACAGGAGAGATTCGT
CGTGTGACGCGAATTGAACAAAGACTGAATGAAGCTGCTAAATTAGGATTCAAAAAAGTCTATGCTCCTAAAAATTCAAT
TGTGGGAATTGATATTCCTGAACAAATAAAAGTAATTGGGGTAACAACCCTAACTGAATGTCTAAAATTAGTATTTGGCT
AA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(70-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

80.795

100

0.808
  radA Streptococcus pneumoniae D39

80.795

100

0.808
  radA Streptococcus pneumoniae R6

80.795

100

0.808
  radA Streptococcus pneumoniae TIGR4

80.795

100

0.808
  radA Streptococcus mitis SK321

80.795

100

0.808
  radA Streptococcus mitis NCTC 12261

80.574

100

0.806
  radA Bacillus subtilis subsp. subtilis str. 168

61.707

100

0.623