Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   VJ737_RS37760 Genome accession   NZ_CP141909
Coordinates   8318430..8319269 (+) Length   279 a.a.
NCBI ID   WP_184595230.1    Uniprot ID   A0A7W4ZTS3
Organism   Streptomyces sp. CGMCC 4.1772     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 8313430..8324269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJ737_RS37740 (VJ737_37740) - 8313494..8314750 (-) 1257 WP_184595226.1 four-carbon acid sugar kinase family protein -
  VJ737_RS37745 (VJ737_37745) - 8314969..8316582 (+) 1614 WP_184595227.1 ABC transporter substrate-binding protein -
  VJ737_RS37750 (VJ737_37750) - 8316586..8317515 (+) 930 WP_184595228.1 ABC transporter permease -
  VJ737_RS37755 (VJ737_37755) - 8317519..8318433 (+) 915 WP_184595229.1 ABC transporter permease -
  VJ737_RS37760 (VJ737_37760) amiE 8318430..8319269 (+) 840 WP_184595230.1 ABC transporter ATP-binding protein Regulator
  VJ737_RS37765 (VJ737_37765) - 8319266..8320078 (+) 813 WP_184595232.1 dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein -
  VJ737_RS37770 (VJ737_37770) - 8320075..8321055 (+) 981 WP_184595234.1 aldo/keto reductase -
  VJ737_RS37775 (VJ737_37775) - 8321093..8321884 (+) 792 WP_184595236.1 aldolase/citrate lyase family protein -
  VJ737_RS37780 (VJ737_37780) - 8321881..8323059 (+) 1179 WP_184595238.1 exo-alpha-sialidase -
  VJ737_RS37785 (VJ737_37785) - 8323208..8323981 (+) 774 WP_184595240.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 29829.36 Da        Isoelectric Point: 6.2476

>NTDB_id=838740 VJ737_RS37760 WP_184595230.1 8318430..8319269(+) (amiE) [Streptomyces sp. CGMCC 4.1772]
MTDGTPLLDVRDLQIELITAHGVVRAVDGVTFTVGRGETVTLIGESGSGKSTTAMGVLRLLPEGLAVLSGAVRVGGRDVV
ADPGAARAVRGRTVSLIPQDPMTALSPVHTIGRQLGEAIRLRHPELSRAQAREKGIELLAQVRITRPETRWKSYPHQFSG
GMLQRILIAIALAGDPELLVADEPTSALDATVQASVLDLLMELQERTGIGMLMITHDLGVARLVSDRIHVMKDGRFVESG
PAERIVDKPAEPYTRALLAAVPRLGAWDEDETSVRGATP

Nucleotide


Download         Length: 840 bp        

>NTDB_id=838740 VJ737_RS37760 WP_184595230.1 8318430..8319269(+) (amiE) [Streptomyces sp. CGMCC 4.1772]
ATGACCGACGGGACACCCCTGCTGGATGTCCGTGACCTCCAGATCGAACTCATCACCGCGCACGGCGTCGTCCGGGCCGT
CGACGGCGTGACCTTCACCGTCGGCCGCGGCGAGACCGTGACCCTCATCGGCGAGTCCGGCTCCGGCAAGTCGACCACCG
CGATGGGCGTACTGCGCCTGCTGCCGGAGGGACTGGCCGTGCTGTCGGGCGCCGTCCGCGTCGGCGGCCGGGACGTCGTC
GCCGACCCCGGCGCGGCCCGCGCGGTACGCGGCCGGACGGTGTCCCTGATCCCGCAGGACCCGATGACCGCCCTCAGCCC
CGTCCACACCATCGGCCGGCAGCTCGGCGAGGCGATCCGCCTGCGCCACCCCGAACTGTCCAGGGCCCAGGCCCGCGAGA
AGGGCATCGAGCTGCTCGCCCAGGTGCGCATCACACGCCCCGAGACCCGCTGGAAGTCCTACCCGCACCAGTTCTCCGGC
GGCATGCTGCAACGCATCCTCATCGCCATCGCCCTGGCCGGCGATCCGGAACTGCTGGTCGCCGACGAACCCACCTCGGC
CCTCGACGCGACCGTGCAGGCCAGCGTTCTGGACCTGCTGATGGAGCTCCAGGAACGCACGGGCATCGGCATGCTGATGA
TCACGCACGACCTGGGCGTGGCCCGGCTGGTCTCCGACCGCATCCACGTCATGAAGGACGGCCGCTTCGTCGAGTCCGGC
CCGGCCGAACGCATCGTCGACAAACCCGCCGAGCCCTACACCCGAGCCCTCCTCGCCGCCGTGCCCCGCCTCGGCGCCTG
GGACGAGGACGAGACCTCCGTGCGAGGAGCCACCCCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(28-186)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(237-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W4ZTS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

39.636

98.566

0.391
  amiE Streptococcus thermophilus LMD-9

39.636

98.566

0.391
  amiE Streptococcus salivarius strain HSISS4

39.636

98.566

0.391
  oppD Streptococcus mutans UA159

39.689

92.115

0.366