Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LLUL007_RS03925 Genome accession   NZ_CP126569
Coordinates   751590..753395 (+) Length   601 a.a.
NCBI ID   WP_396426172.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UL007     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 746590..758395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUL007_RS03900 (LLUL007_03880) - 746741..748162 (+) 1422 WP_011676727.1 NCS2 family permease -
  LLUL007_RS03905 (LLUL007_03885) - 748395..748592 (+) 198 WP_396426169.1 hypothetical protein -
  LLUL007_RS03910 (LLUL007_03890) - 748631..749218 (+) 588 WP_396426170.1 alpha/beta hydrolase -
  LLUL007_RS03915 (LLUL007_03895) - 749372..750457 (+) 1086 WP_396426171.1 YdcF family protein -
  LLUL007_RS03920 (LLUL007_03900) coiA 750532..751515 (+) 984 WP_032950503.1 competence protein CoiA Machinery gene
  LLUL007_RS03925 (LLUL007_03905) pepF 751590..753395 (+) 1806 WP_396426172.1 oligoendopeptidase F Regulator
  LLUL007_RS03930 (LLUL007_03910) - 753398..754081 (+) 684 WP_011676723.1 O-methyltransferase -
  LLUL007_RS03935 (LLUL007_03915) - 754237..755163 (+) 927 WP_014572243.1 peptidyl-prolyl cis-trans isomerase -
  LLUL007_RS03940 (LLUL007_03920) alaS 755425..758043 (+) 2619 WP_011676721.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69982.65 Da        Isoelectric Point: 4.9158

>NTDB_id=838725 LLUL007_RS03925 WP_396426172.1 751590..753395(+) (pepF) [Lactococcus cremoris strain UL007]
MVKNRNEIPEALTWDLTTIFSTDQKWETELEKVKKELSLVETNDKGHLLDSSETLLTITKNMLSISQKVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVNFGESYAFYEPEFLKITKETYEQWLEILQELKNYDHMFERLFAKKEHILSQKEEKILAA
AGEIFESPSETFEIFDNADVKFPFAKNELGEKIQLTHGNYSSLMESKNREVRKAAYEALYSNYEQYQHTYAKTLQTNVKV
HNFNAQIRAYDSARQAALMSNFVPEKVYDVLIEGIHQHLPLLHRYIELRKKILGISDFKMYDIYTPLSNLDYKFNYTEGV
KKAQEVLAIFGEEYSQKVKAAFDERWIDVEENVGKRSGAYSGGSYDTKAFMLLNWQGTLDDLFTLVHEMGHSIHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTETLLKESNDEKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEVDAEGEVLTSE
FLNSLYGELNEKYYGLSAKENPEIQFEWARIPHFYYNFYVFQYATGFAAASFLAEKVVHGSATDRQNYLDYLKAGSSAYP
LDVIAKAGVNMESTDYLESAFKLFEKRLNELEKLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=838725 LLUL007_RS03925 WP_396426172.1 751590..753395(+) (pepF) [Lactococcus cremoris strain UL007]
ATGGTAAAAAATAGAAATGAAATCCCTGAAGCCTTGACTTGGGATTTGACAACAATTTTTTCAACAGATCAAAAATGGGA
AACAGAATTAGAGAAGGTAAAAAAAGAGCTTTCGCTTGTTGAGACAAATGATAAAGGTCATTTACTTGATTCATCAGAAA
CTTTACTGACAATTACTAAAAATATGCTATCAATTTCTCAAAAAGTTGAAAAGCTTTATGTTTATGCTTCAATGAAAAAT
GATCAAGATACAAGAGAAGCAAAGTATCAAGAATATCAATCAAAAGCAACGGCCCTCTATGTTAATTTTGGGGAAAGCTA
TGCCTTTTATGAACCTGAGTTTTTAAAAATTACAAAAGAAACCTACGAACAATGGTTAGAAATCCTTCAGGAATTGAAAA
ATTACGATCACATGTTTGAACGTTTATTTGCTAAAAAAGAACATATCCTTAGTCAAAAAGAAGAAAAAATATTGGCGGCA
GCGGGTGAAATCTTTGAAAGTCCTTCGGAGACTTTTGAAATTTTCGATAATGCAGATGTTAAATTTCCTTTTGCTAAAAA
TGAATTGGGAGAAAAGATTCAGTTGACACATGGAAATTATAGCTCTCTTATGGAAAGTAAAAACAGGGAAGTAAGAAAAG
CGGCTTATGAAGCACTTTACAGCAATTATGAACAATATCAGCATACCTATGCAAAAACTTTGCAGACCAATGTAAAAGTT
CATAATTTCAATGCCCAAATACGCGCATATGATTCAGCACGTCAGGCAGCTTTGATGAGTAATTTTGTTCCAGAAAAAGT
TTATGACGTCTTGATAGAAGGCATTCATCAACACTTACCACTTTTACATCGCTATATTGAATTACGTAAAAAAATCTTAG
GAATTTCTGATTTCAAGATGTATGATATCTATACTCCATTATCTAATTTAGATTATAAATTCAATTACACTGAAGGAGTT
AAGAAAGCGCAAGAAGTGCTTGCAATTTTTGGTGAAGAGTATAGTCAGAAAGTTAAAGCGGCTTTTGATGAACGTTGGAT
TGATGTTGAAGAAAATGTCGGGAAACGGTCAGGGGCATACTCAGGTGGTTCTTATGATACCAAGGCATTCATGTTACTCA
ATTGGCAAGGGACATTGGACGATCTTTTTACATTGGTTCATGAGATGGGGCATTCTATTCACAGCACTTTTACGAGGGAA
AATCAACCTTATGTTTATGGAGATTACCCAATCTTCTTAGCAGAGATTGCTTCAACTACCAATGAAAATATTTTAACTGA
GACTTTGCTCAAAGAAAGCAATGATGAAAAGGAACGTTTTGCTCTTTTGAACCATTGGTTAGATAGTTTTCGAGGAACCG
TATTTCGTCAAAGTCAATTTGCTGAATTTGAACAAAAAATTCACGAAGTCGATGCTGAAGGTGAAGTATTGACGAGCGAA
TTTTTGAATTCTCTTTATGGCGAACTTAATGAAAAATATTATGGCTTATCTGCCAAAGAAAATCCTGAAATTCAGTTTGA
ATGGGCAAGAATTCCGCATTTCTATTATAATTTTTACGTTTTTCAATACGCAACAGGCTTTGCCGCAGCCTCATTTCTAG
CTGAAAAAGTGGTGCATGGTTCGGCTACTGACCGCCAAAATTATCTTGATTATTTAAAAGCTGGTTCATCAGCCTATCCA
CTAGACGTGATTGCAAAAGCTGGAGTTAATATGGAATCTACAGATTACTTAGAGTCTGCTTTTAAGCTTTTTGAAAAACG
TTTGAATGAATTAGAAAAATTAGTTGAAAAAGGAGTCCATCTTTAA

Domains

Predicted by InterProScan.

Oligopeptidase F (Peptidase_M3_N)

(113-182)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

63.727

100

0.637