Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QMK35_RS11880 Genome accession   NZ_CP126540
Coordinates   2461189..2462559 (-) Length   456 a.a.
NCBI ID   WP_107384976.1    Uniprot ID   A0A2T4LW14
Organism   Staphylococcus cohnii strain SDAQ-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2456189..2467559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK35_RS11865 (QMK35_11865) cysE 2457196..2457837 (-) 642 WP_037539884.1 serine O-acetyltransferase -
  QMK35_RS11870 (QMK35_11870) gltX 2458161..2459615 (-) 1455 WP_107384255.1 glutamate--tRNA ligase -
  QMK35_RS11875 (QMK35_11875) - 2460056..2461114 (-) 1059 WP_019468583.1 PIN/TRAM domain-containing protein -
  QMK35_RS11880 (QMK35_11880) radA 2461189..2462559 (-) 1371 WP_107384976.1 DNA repair protein RadA Machinery gene
  QMK35_RS11885 (QMK35_11885) - 2462907..2465369 (-) 2463 WP_285159649.1 ATP-dependent Clp protease ATP-binding subunit -
  QMK35_RS11890 (QMK35_11890) - 2465381..2466391 (-) 1011 WP_019468586.1 protein arginine kinase -
  QMK35_RS11895 (QMK35_11895) - 2466384..2466935 (-) 552 WP_019468587.1 UvrB/UvrC motif-containing protein -
  QMK35_RS11900 (QMK35_11900) - 2466960..2467421 (-) 462 WP_019468588.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50363.83 Da        Isoelectric Point: 7.2493

>NTDB_id=838690 QMK35_RS11880 WP_107384976.1 2461189..2462559(-) (radA) [Staphylococcus cohnii strain SDAQ-1]
MAKKKVVFECMACGYQSPKWMGKCPNCGGWNQMEEIIEQKTTSPKHGVRSRENTAKVQKLNDIKHETTPRIKTNSAEFNR
VLGGGVVNGSLVLIGGDPGIGKSTLLLQICAALSQDKNVLYITGEESLNQTKLRADRLDEDSSNLNVFAETDLEVIHETV
KQLKPDLLVVDSIQTIFHPEISSAPGSVSQVRESTQSLMNIAKQLNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVKNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLGIIVATASSFKDLTVDGLDCFIGEVGLTGEV
RRVSRIEQRVQEAEKLGFKRIIIPESNIGGWEFPSNIKVIGVTNVHEALKYALTKH

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=838690 QMK35_RS11880 WP_107384976.1 2461189..2462559(-) (radA) [Staphylococcus cohnii strain SDAQ-1]
TTGGCCAAAAAGAAAGTGGTTTTTGAATGTATGGCATGTGGTTACCAGTCGCCTAAATGGATGGGGAAATGTCCTAACTG
TGGTGGATGGAATCAAATGGAAGAAATAATAGAACAGAAAACGACAAGCCCAAAACATGGTGTACGTAGTCGCGAAAATA
CTGCCAAAGTACAGAAGTTAAATGATATTAAGCATGAGACAACACCACGTATTAAAACGAATTCAGCAGAATTTAATCGA
GTGCTTGGTGGCGGGGTTGTAAATGGTTCGCTTGTATTAATTGGTGGCGATCCAGGTATCGGTAAATCAACACTATTGTT
ACAAATATGTGCTGCATTATCACAAGATAAAAATGTTTTATATATAACTGGTGAAGAATCATTAAACCAAACAAAATTAA
GAGCGGATCGATTAGATGAAGACTCAAGTAATTTAAATGTATTTGCAGAAACAGATTTAGAAGTGATACATGAGACAGTT
AAACAATTGAAGCCTGATTTGCTTGTTGTAGATTCTATACAGACCATTTTCCACCCTGAAATCAGCTCTGCGCCCGGTTC
GGTATCTCAGGTGAGGGAGAGTACACAGAGCTTGATGAATATAGCTAAACAACTAAATATTGCCACTTTTATTGTTGGTC
ATGTAACGAAAGAAGGTCAGATTGCAGGGCCTCGTCTGTTAGAACATATGGTAGATACGGTACTTTATTTTGAAGGTGAT
GAGCATCATGCTTATCGTATTTTAAGAGCGGTGAAAAACCGTTTTGGCTCTACGAATGAAATGGGTATTTTTGAAATGAA
GCAGAGTGGATTAAAAGGTGTTAAAAACCCTTCAGAAATGTTTTTAGAAGAGCGTTCTACGAATGTTCCAGGTTCAACAA
TCGTGTCTACGATGGAAGGTACAAGACCATTATTAATTGAAGTTCAAGCCTTAGTAACACCAACAACCTTTAATAACCCT
AGACGTATGGCTACAGGAATAGATCACAATCGTTTAAGTTTGTTGATGGCTGTATTAGAGAAAAAAGAGAATTATTTACT
GCAACAACAAGATGCTTATATTAAAGTAGCTGGTGGCGTAAGATTAACAGAACCTGCTGTCGATTTAGGAATCATTGTTG
CTACAGCCTCAAGTTTTAAAGATTTAACTGTAGATGGATTAGATTGTTTTATTGGTGAGGTTGGTTTAACCGGAGAAGTG
AGACGTGTTTCTCGCATTGAACAACGTGTACAAGAAGCGGAAAAACTAGGTTTTAAACGCATTATTATTCCTGAATCTAA
TATTGGGGGCTGGGAATTTCCTAGCAATATCAAAGTCATTGGTGTGACAAATGTGCACGAGGCATTAAAATATGCCTTAA
CAAAACATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-219)

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4LW14

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.132

100

0.651
  radA Streptococcus pneumoniae Rx1

60

98.684

0.592
  radA Streptococcus pneumoniae D39

60

98.684

0.592
  radA Streptococcus pneumoniae R6

60

98.684

0.592
  radA Streptococcus pneumoniae TIGR4

60

98.684

0.592
  radA Streptococcus mitis SK321

60

98.684

0.592
  radA Streptococcus mitis NCTC 12261

60

98.684

0.592