Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   QMK35_RS04560 Genome accession   NZ_CP126540
Coordinates   987740..988456 (-) Length   238 a.a.
NCBI ID   WP_019469554.1    Uniprot ID   -
Organism   Staphylococcus cohnii strain SDAQ-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 982740..993456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK35_RS04540 (QMK35_04540) - 982981..984066 (+) 1086 WP_285159883.1 YeeE/YedE family protein -
  QMK35_RS04545 (QMK35_04545) - 984092..984316 (+) 225 WP_019469551.1 sulfurtransferase TusA family protein -
  QMK35_RS04550 (QMK35_04550) - 985102..986583 (+) 1482 WP_285159884.1 sucrose-6-phosphate hydrolase -
  QMK35_RS04555 (QMK35_04555) - 986584..987549 (+) 966 WP_107386132.1 carbohydrate kinase -
  QMK35_RS04560 (QMK35_04560) agrA 987740..988456 (-) 717 WP_019469554.1 quorum-sensing response regulator AgrA Regulator
  QMK35_RS04565 (QMK35_04565) agrC 988469..989764 (-) 1296 WP_107524341.1 quorum-sensing sensor histidine kinase AgrC -
  QMK35_RS04570 (QMK35_04570) agrD 989795..989932 (-) 138 WP_064264468.1 cyclic lactone autoinducer peptide AgrD -
  QMK35_RS04575 (QMK35_04575) - 989935..990504 (-) 570 WP_064264467.1 accessory gene regulator AgrB -
  QMK35_RS04580 (QMK35_04580) - 991243..992028 (-) 786 WP_107383591.1 carbon-nitrogen family hydrolase -
  QMK35_RS04585 (QMK35_04585) - 992247..992876 (-) 630 WP_019469559.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27995.81 Da        Isoelectric Point: 4.8826

>NTDB_id=838668 QMK35_RS04560 WP_019469554.1 987740..988456(-) (agrA) [Staphylococcus cohnii strain SDAQ-1]
MKIFICEDDVRQRENIVSIINNYIMIEEKPMEIEVATSDPYEVLERAKELKDIGCYFLDIQLEADINGIKLASEIRKYDP
VSNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRVIDCLETSETRLKLLSKENTVETIELKRGSNSIYVQYDDVM
FFESSSNSHRLIAHLDNRQIEFYGNLKEIDNLDERFFRCHNSFVVNRHNIESIDSKSRIVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=838668 QMK35_RS04560 WP_019469554.1 987740..988456(-) (agrA) [Staphylococcus cohnii strain SDAQ-1]
ATGAAAATATTCATTTGTGAAGATGATGTAAGACAACGTGAAAATATAGTTTCAATTATCAATAATTACATCATGATAGA
AGAAAAGCCAATGGAAATTGAAGTAGCTACGTCAGATCCTTATGAGGTATTGGAACGTGCAAAAGAACTTAAGGATATTG
GTTGTTATTTTCTTGATATACAATTAGAAGCTGATATTAATGGCATTAAATTAGCAAGTGAGATTAGAAAATACGATCCA
GTGAGCAATATTATATTTGTCACAAGTCACAGTGAGCTCACTTATTTAACTTTTGTATATAAAGTTGCTGCTATGGATTT
TATTTTCAAAGATGATCCTGATGAATTAAAATCAAGAGTAATTGATTGTCTCGAAACATCAGAAACTCGATTGAAGCTAC
TTTCAAAAGAAAATACAGTTGAAACAATCGAGCTCAAACGTGGCAGTAATTCTATTTATGTACAATATGATGATGTAATG
TTTTTTGAATCTTCTTCGAATTCACATCGTTTGATTGCTCATCTAGACAATAGGCAAATTGAATTTTATGGTAATTTAAA
AGAAATCGATAATTTAGATGAACGATTTTTTAGATGTCATAATAGTTTTGTTGTTAATAGACACAATATAGAATCCATTG
ATTCTAAGTCTCGTATTGTTTACTTCAAAAATAATGAACACTGCTACGCGTCCGTACGTAATGTCAAAAAAATTTAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

84.454

100

0.845