Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QNO02_RS28045 Genome accession   NZ_CP126535
Coordinates   6462036..6462989 (-) Length   317 a.a.
NCBI ID   WP_289390560.1    Uniprot ID   -
Organism   Paenibacillus sp. PK1-4R     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6457036..6467989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNO02_RS28025 (QNO02_28025) - 6457519..6459114 (-) 1596 WP_091036071.1 spore germination protein -
  QNO02_RS28030 (QNO02_28030) - 6459289..6460275 (-) 987 WP_289390559.1 siderophore ABC transporter substrate-binding protein -
  QNO02_RS28035 (QNO02_28035) - 6460319..6461077 (-) 759 WP_091036066.1 ABC transporter ATP-binding protein -
  QNO02_RS28040 (QNO02_28040) - 6461071..6462039 (-) 969 WP_276324002.1 iron chelate uptake ABC transporter family permease subunit -
  QNO02_RS28045 (QNO02_28045) ceuB 6462036..6462989 (-) 954 WP_289390560.1 ABC transporter permease Machinery gene
  QNO02_RS28050 (QNO02_28050) - 6463237..6463572 (-) 336 WP_289390561.1 hypothetical protein -
  QNO02_RS28055 (QNO02_28055) - 6463617..6464318 (-) 702 WP_289390562.1 pirin family protein -
  QNO02_RS28060 (QNO02_28060) - 6464518..6464931 (-) 414 WP_091036057.1 DoxX family protein -
  QNO02_RS28065 (QNO02_28065) - 6464982..6465842 (-) 861 WP_289390563.1 M56 family metallopeptidase -
  QNO02_RS28070 (QNO02_28070) - 6465844..6466260 (-) 417 WP_091036054.1 BlaI/MecI/CopY family transcriptional regulator -
  QNO02_RS28075 (QNO02_28075) - 6466470..6467933 (-) 1464 WP_289392915.1 catalase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34994.14 Da        Isoelectric Point: 10.0976

>NTDB_id=838624 QNO02_RS28045 WP_289390560.1 6462036..6462989(-) (ceuB) [Paenibacillus sp. PK1-4R]
MKLRYMLIVLAVLSIVYIFIGNSDISPLDIFHLSSVQLQVLQVSRFPRLISILVAGISMSVIGLIMQQLTRNRFVSPTTA
GTMDSARLGILVTLMWFPGASPLQKMLVAFAFALAGTLIFMRILEKVKFKDTIYIALLGLMFGNIVSSVTTFFAYKNDLI
QNISSWLQGDFSTIMKGRYELIYISIPLLIIVYLFANRFTLAGMGEDFSTNLGLAYRRVVNVGLILVAMVSAVVIITVGT
IPFLGLVVPNIVTLYKGDNLRDTLPHTAVLGAIFVLVCDILGQLIIYPYQLSISLTVGVVGSVLFLYLLLRRKAYGS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=838624 QNO02_RS28045 WP_289390560.1 6462036..6462989(-) (ceuB) [Paenibacillus sp. PK1-4R]
ATGAAGTTACGTTATATGTTGATCGTACTGGCTGTACTGTCTATCGTATACATATTTATTGGAAATTCAGACATTTCACC
ATTGGATATATTTCATTTGTCCTCAGTCCAGCTACAGGTATTACAAGTTAGCCGGTTTCCCCGCCTGATCAGCATCCTTG
TCGCCGGAATCAGCATGAGTGTAATCGGACTGATTATGCAGCAGCTGACACGCAACCGATTCGTTTCCCCAACTACAGCA
GGAACGATGGATTCAGCCAGATTGGGTATTCTTGTGACGTTAATGTGGTTCCCGGGAGCATCCCCTCTGCAAAAAATGTT
GGTCGCTTTTGCCTTTGCTCTGGCGGGAACACTGATTTTCATGCGAATTCTGGAGAAAGTCAAGTTCAAGGATACGATAT
ATATCGCTCTGCTAGGTCTTATGTTTGGCAACATTGTAAGCTCCGTCACGACATTTTTTGCTTACAAAAACGATCTGATC
CAGAACATCTCGTCTTGGTTACAGGGTGACTTCTCCACCATCATGAAGGGACGTTATGAACTGATCTATATCAGTATCCC
GTTGCTCATTATTGTGTACCTGTTCGCTAATCGTTTTACACTTGCAGGAATGGGCGAAGATTTCTCAACCAACCTTGGAC
TGGCGTATCGACGAGTTGTGAATGTCGGCCTGATCCTGGTGGCGATGGTTTCAGCAGTAGTGATTATTACTGTAGGTACA
ATTCCGTTTCTGGGCCTTGTCGTGCCAAATATCGTAACACTGTACAAAGGGGATAACTTACGTGATACATTGCCTCATAC
GGCAGTGCTTGGTGCGATCTTTGTTCTGGTCTGCGATATTCTGGGTCAATTAATTATTTATCCTTATCAACTTTCGATCA
GTCTGACGGTGGGAGTTGTGGGAAGTGTATTATTCCTGTATTTACTGCTTCGAAGAAAGGCTTATGGATCATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.633

99.685

0.505