Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QNO02_RS26915 Genome accession   NZ_CP126535
Coordinates   6161844..6163211 (-) Length   455 a.a.
NCBI ID   WP_036671578.1    Uniprot ID   A0AAN4L8U6
Organism   Paenibacillus sp. PK1-4R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6156844..6168211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNO02_RS26885 (QNO02_26885) ispF 6156945..6157421 (-) 477 WP_017692052.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QNO02_RS26890 (QNO02_26890) ispD 6157418..6158113 (-) 696 WP_091039159.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QNO02_RS26895 (QNO02_26895) - 6158196..6159281 (-) 1086 WP_091039184.1 PIN/TRAM domain-containing protein -
  QNO02_RS26900 (QNO02_26900) - 6159455..6159850 (+) 396 WP_017692049.1 hypothetical protein -
  QNO02_RS26905 (QNO02_26905) pssA 6159977..6160708 (-) 732 WP_017692048.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  QNO02_RS26910 (QNO02_26910) disA 6160754..6161830 (-) 1077 WP_062836168.1 DNA integrity scanning diadenylate cyclase DisA -
  QNO02_RS26915 (QNO02_26915) radA 6161844..6163211 (-) 1368 WP_036671578.1 DNA repair protein RadA Machinery gene
  QNO02_RS26920 (QNO02_26920) - 6163472..6165934 (-) 2463 WP_062836200.1 ATP-dependent Clp protease ATP-binding subunit -
  QNO02_RS26925 (QNO02_26925) - 6166119..6167189 (-) 1071 WP_036607140.1 protein arginine kinase -
  QNO02_RS26930 (QNO02_26930) - 6167218..6167742 (-) 525 WP_091039155.1 UvrB/UvrC motif-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49459.06 Da        Isoelectric Point: 6.9994

>NTDB_id=838620 QNO02_RS26915 WP_036671578.1 6161844..6163211(-) (radA) [Paenibacillus sp. PK1-4R]
MAKVKTKFQCTECGYEAPKWYGKCPGCQSWNSMVEETETVVKTQGRNSPLFDSKDKPLPIIDIDSGQEPRVQTGIGELNR
VLGGGIVPGSLVLVGGDPGIGKSTLMLQTSHALTHSGLRVLYVSGEESVKQTKLRADRLGALSAELYVLCETNMERVEEA
VDQIQPHFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEDGLREVGNPSELFLSERPLGVAGSTVVASMEGTRPLLVELQALISTTHFPS
PRRMATGVDLHRLNLIIAVLEKRMGMFLQTQDAYLNVAGGVRLDEPAVDLAVAVSIASSLRDVPTKPDDVIFGEIGLTGE
VRAVSRAEQRVKEAAKLGFKRVILPEKSLKGWKHPRGIQLIGVNTVADALAVALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=838620 QNO02_RS26915 WP_036671578.1 6161844..6163211(-) (radA) [Paenibacillus sp. PK1-4R]
GTGGCCAAAGTTAAAACCAAGTTTCAATGTACGGAATGCGGCTATGAAGCCCCCAAGTGGTACGGTAAGTGTCCGGGTTG
TCAGTCATGGAATTCAATGGTGGAAGAAACAGAGACGGTGGTCAAAACACAAGGGAGAAATTCTCCTCTGTTTGACAGTA
AAGATAAACCGCTTCCTATCATAGATATAGATAGCGGTCAGGAACCGCGTGTACAGACTGGAATCGGAGAGTTGAACCGG
GTATTGGGTGGCGGAATCGTTCCAGGTTCACTCGTTCTGGTGGGCGGAGATCCGGGTATCGGTAAATCAACGTTGATGTT
GCAGACGTCTCATGCTTTAACGCACTCGGGTTTGCGTGTGTTATATGTTTCCGGTGAGGAATCAGTCAAGCAAACCAAAT
TGCGGGCAGACCGTCTCGGGGCACTCTCTGCCGAGTTGTATGTGCTGTGTGAAACCAATATGGAACGTGTAGAGGAAGCG
GTGGATCAGATCCAGCCGCATTTCCTTGTCATCGACTCCATTCAGACGGTATATCTTCCCGAAGTTACCAGTGCGCCGGG
TAGTGTAGCACAGGTAAGGGAATGTACGTCAAGGTTCATGCGGATTGCCAAAGGCAGAGGCATTGCAACGGTTCTTGTGG
GGCATGTTACCAAAGAAGGTGCCATTGCCGGTCCGCGTATGTTAGAACATATGGTGGATTGCGTGCTTTATTTTGAAGGA
GAACGGCATCATACGTATCGCCTGCTGCGTGCGGTGAAGAACCGTTTTGGTTCAACCAATGAGATTGGCATTTTTGAAAT
GGGCGAGGATGGACTTCGTGAGGTGGGCAATCCGTCCGAACTCTTTTTGTCAGAACGCCCACTGGGTGTAGCGGGTTCAA
CGGTAGTTGCCAGTATGGAGGGGACACGTCCTCTGCTCGTGGAATTACAGGCGTTGATCTCGACTACCCATTTCCCTTCT
CCCCGCCGTATGGCAACAGGGGTAGATCTGCATCGATTAAATCTGATTATTGCAGTGCTGGAGAAACGGATGGGCATGTT
TTTACAGACCCAGGATGCGTATCTGAACGTGGCTGGTGGAGTACGGTTGGATGAGCCCGCTGTAGATTTGGCGGTTGCTG
TCAGCATTGCATCCAGTTTGAGAGATGTACCGACCAAGCCGGATGACGTCATCTTTGGCGAGATTGGTCTGACAGGTGAG
GTTCGAGCCGTATCACGGGCCGAACAACGAGTGAAGGAAGCCGCGAAGCTGGGCTTCAAACGAGTCATTTTACCGGAAAA
AAGCTTAAAGGGCTGGAAACATCCTCGCGGGATACAACTGATCGGTGTGAATACCGTGGCAGATGCACTAGCGGTTGCTT
TAGATTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(349-427)

AAA domain (AAA_25)

(77-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.284

100

0.657
  radA Streptococcus pneumoniae Rx1

59.333

98.901

0.587
  radA Streptococcus pneumoniae D39

59.333

98.901

0.587
  radA Streptococcus pneumoniae R6

59.333

98.901

0.587
  radA Streptococcus pneumoniae TIGR4

59.333

98.901

0.587
  radA Streptococcus mitis NCTC 12261

59.333

98.901

0.587
  radA Streptococcus mitis SK321

59.333

98.901

0.587