Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   QN218_RS18905 Genome accession   NZ_CP126534
Coordinates   3722927..3724039 (-) Length   370 a.a.
NCBI ID   WP_019257226.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain BSY82     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3717927..3729039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN218_RS18890 gyrA 3718019..3720484 (-) 2466 WP_019257227.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -
  QN218_RS18895 gyrB 3720694..3722610 (-) 1917 WP_003236659.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  QN218_RS18900 remB 3722664..3722909 (-) 246 WP_003219266.1 extracellular matrix regulator RemB -
  QN218_RS18905 recF 3722927..3724039 (-) 1113 WP_019257226.1 DNA replication/repair protein RecF Machinery gene
  QN218_RS18910 rlbA 3724055..3724270 (-) 216 WP_003236655.1 ribosome maturation protein RlbA -
  QN218_RS18915 dnaN 3724402..3725538 (-) 1137 WP_003236654.1 DNA polymerase III subunit beta -
  QN218_RS18920 dnaA 3725727..3727067 (-) 1341 WP_003236652.1 chromosomal replication initiator protein DnaA -
  QN218_RS18925 rpmH 3727694..3727828 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  QN218_RS18930 rnpA 3727981..3728331 (+) 351 WP_003236647.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42360.36 Da        Isoelectric Point: 7.0881

>NTDB_id=838594 QN218_RS18905 WP_019257226.1 3722927..3724039(-) (recF) [Bacillus inaquosorum strain BSY82]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLYDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALEVSDPEDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=838594 QN218_RS18905 WP_019257226.1 3722927..3724039(-) (recF) [Bacillus inaquosorum strain BSY82]
TTGTATATCCAGAACTTAGAGCTGACATCTTACCGCAACTACGACCATGCCGAACTGCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAAACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATCATGTTTGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCTGTTTACCTGTATGACCTTTCTCTTTACCAGAAAATCCTTTCTCAGCGA
AATCATTTTTTGAAGCAGCTGCAAACAAGAAAACAAACTGACAGAACGATGCTCGATGTTTTGACCGATCAGCTTGTGGA
AGTTGCGGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAAAAATGGGCGCAGCCAATTCATGCGGGCA
TCTCAAGAGGGTTAGAAGAGCTGACCCTAAAGTACCATACGGCTCTTGAGGTATCAGATCCTGAAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATCGAGCGCGGTGTTACGCTGTCAGGGCCTCATCG
TGACGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCATTGT
CCCTTAAGCTGGCGGAAATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAGCTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.189

100

0.992