Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QN218_RS18680 Genome accession   NZ_CP126534
Coordinates   3682482..3682772 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus inaquosorum strain BSY82     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3677482..3687772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN218_RS18665 - 3677678..3678991 (-) 1314 WP_060397765.1 ubiquitin-like domain-containing protein -
  QN218_RS18670 - 3679147..3679914 (-) 768 WP_060397764.1 TatD family hydrolase -
  QN218_RS18675 metG 3679993..3681987 (-) 1995 WP_060397763.1 methionine--tRNA ligase -
  QN218_RS18680 abrB 3682482..3682772 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  QN218_RS18685 rsmI 3682821..3683699 (-) 879 WP_060397762.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QN218_RS18690 - 3683674..3683973 (-) 300 WP_003242154.1 GIY-YIG nuclease family protein -
  QN218_RS18695 - 3683960..3684703 (-) 744 WP_060397761.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QN218_RS18700 yabA 3684762..3685121 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  QN218_RS18705 ricT 3685136..3685963 (-) 828 WP_060397760.1 competence/sporulation regulator complex protein RicT -
  QN218_RS18710 holB 3685966..3686955 (-) 990 WP_084993281.1 DNA polymerase III subunit delta' -
  QN218_RS18715 - 3686967..3687407 (-) 441 WP_060397758.1 YaaR family protein -
  QN218_RS18720 darA 3687420..3687749 (-) 330 WP_003218295.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=838592 QN218_RS18680 WP_003226760.1 3682482..3682772(+) (abrB) [Bacillus inaquosorum strain BSY82]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=838592 QN218_RS18680 WP_003226760.1 3682482..3682772(+) (abrB) [Bacillus inaquosorum strain BSY82]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAATTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATTATCAGCGAAATCCAAAACCAACTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1