Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QN218_RS10890 Genome accession   NZ_CP126534
Coordinates   2101722..2102000 (-) Length   92 a.a.
NCBI ID   WP_003238863.1    Uniprot ID   A0A9Q4EYY4
Organism   Bacillus inaquosorum strain BSY82     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2096722..2107000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN218_RS10870 ade 2096772..2098505 (-) 1734 WP_060398542.1 adenine deaminase -
  QN218_RS10875 ktrC 2098663..2099328 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  QN218_RS10880 - 2099400..2100227 (-) 828 WP_060398541.1 gamma-glutamylcyclotransferase -
  QN218_RS10885 kinC 2100243..2101529 (-) 1287 WP_060398540.1 two-component sensor histidine kinase KinC -
  QN218_RS10890 abrB 2101722..2102000 (-) 279 WP_003238863.1 transcriptional regulator AbhA Regulator
  QN218_RS10895 mreBH 2102283..2103290 (+) 1008 WP_029316824.1 cell shape-determining protein MreBH -
  QN218_RS10900 - 2103391..2103525 (+) 135 WP_003238865.1 protein YkpC -
  QN218_RS10905 - 2103637..2104869 (+) 1233 WP_060398539.1 aminopeptidase -
  QN218_RS10910 - 2104898..2105809 (-) 912 WP_060398538.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10242.04 Da        Isoelectric Point: 5.8742

>NTDB_id=838563 QN218_RS10890 WP_003238863.1 2101722..2102000(-) (abrB) [Bacillus inaquosorum strain BSY82]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSDNKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=838563 QN218_RS10890 WP_003238863.1 2101722..2102000(-) (abrB) [Bacillus inaquosorum strain BSY82]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGTATTGTTATGCCGATAGAATTAAGACGGGCACTGGA
TATTGCCATAAAAGACAGTATTGAATTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGTGTTT
GTTTAATGACCGGAGAAATCACTTCAGATAATAAAGAATACGGCAACGGTAAAATTACGTTAAGCCCAGAAGGTGCACAG
CTGCTTCTTGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

59.341

98.913

0.587