Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QN218_RS05960 Genome accession   NZ_CP126534
Coordinates   1144722..1145489 (+) Length   255 a.a.
NCBI ID   WP_060399045.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain BSY82     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1139722..1150489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN218_RS05930 pgpH 1140020..1142155 (+) 2136 WP_080429034.1 cyclic-di-AMP phosphodiesterase PgpH -
  QN218_RS05935 ybeY 1142156..1142629 (+) 474 WP_003237071.1 rRNA maturation RNase YbeY -
  QN218_RS05940 - 1142610..1142981 (+) 372 WP_003237069.1 diacylglycerol kinase family protein -
  QN218_RS05945 - 1143102..1143512 (+) 411 WP_060399046.1 cytidine deaminase -
  QN218_RS05950 era 1143493..1144398 (+) 906 WP_003226207.1 GTPase Era -
  QN218_RS05955 - 1144542..1144685 (+) 144 WP_003230053.1 YqzL family protein -
  QN218_RS05960 recO 1144722..1145489 (+) 768 WP_060399045.1 DNA repair protein RecO Machinery gene
  QN218_RS05965 glyQ 1145787..1146674 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  QN218_RS05970 glyS 1146667..1148706 (+) 2040 WP_060399044.1 glycine--tRNA ligase subunit beta -
  QN218_RS05975 ccpN 1148840..1149478 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  QN218_RS05980 - 1149504..1150316 (+) 813 WP_003237056.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29401.16 Da        Isoelectric Point: 8.5552

>NTDB_id=838546 QN218_RS05960 WP_060399045.1 1144722..1145489(+) (recO) [Bacillus inaquosorum strain BSY82]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESFKQLNEGTDPDVIIFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKQETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=838546 QN218_RS05960 WP_060399045.1 1144722..1145489(+) (recO) [Bacillus inaquosorum strain BSY82]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAACGATTACGGAGAGACGAATAAAATCGTTACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCAAGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTCTTAATGCAAAAAACAACGGGCCTCGGAACGCTTCAGCAGGGTGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGATTTGTTTTTAACCGCATATGCTGCGTATATTGCTGAGCTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAATTCATTTTAGAATCGTTTAAACAGCTGAATGAAGGAACAGATCCGGATGTCATCATCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGGCTGTATCCCGAGCTGAATCACTGTGTGCATTGTAAAAGCCAGGACGGG
ACATTTCATTTCTCTGTCCGTGATAACGGGTTTATTTGCCATCGTTGTTTTGAAAAAGATCCTTACAGGATTCCGATTAA
ACCGCAAACGGCAAGGCTGTTGAGGCTGTTTTATTACTTCGATCTGTCGAGGCTGGGCAATGTGTCCTTAAAACAGGAAA
CAAAAGCTGAATTGAAGCAAGTGATTGATTTATATTATGAGGAATATTCAGGGTTATATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

98.039

100

0.98