Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   VB129_RS15565 Genome accession   NZ_CP141844
Coordinates   3148448..3149077 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain HN68     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3143448..3154077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VB129_RS15550 (VB129_15550) helD 3143690..3145744 (-) 2055 WP_000420537.1 DNA helicase IV -
  VB129_RS15555 (VB129_15555) yccF 3145867..3146313 (+) 447 WP_001261235.1 YccF domain-containing protein -
  VB129_RS15560 (VB129_15560) yccS 3146323..3148485 (+) 2163 WP_000875044.1 YccS family putative transporter -
  VB129_RS15565 (VB129_15565) sxy/tfoX 3148448..3149077 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  VB129_RS15570 (VB129_15570) sulA 3149296..3149805 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  VB129_RS15575 (VB129_15575) ompA 3150162..3151214 (+) 1053 WP_001361736.1 porin OmpA -
  VB129_RS15580 (VB129_15580) matP 3151290..3151742 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  VB129_RS15585 (VB129_15585) ycbZ 3151928..3153688 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=838544 VB129_RS15565 WP_000839153.1 3148448..3149077(-) (sxy/tfoX) [Escherichia coli strain HN68]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=838544 VB129_RS15565 WP_000839153.1 3148448..3149077(-) (sxy/tfoX) [Escherichia coli strain HN68]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1