Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QN218_RS05705 Genome accession   NZ_CP126534
Coordinates   1101535..1101945 (+) Length   136 a.a.
NCBI ID   WP_003237136.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain BSY82     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1096535..1106945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN218_RS05680 - 1097550..1098764 (+) 1215 WP_060399070.1 MFS transporter -
  QN218_RS05685 - 1098890..1100040 (+) 1151 WP_178938630.1 IS3 family transposase -
  QN218_RS05690 - 1100179..1100357 (+) 179 Protein_1109 hypothetical protein -
  QN218_RS05695 - 1100315..1100483 (+) 169 Protein_1110 recombinase family protein -
  QN218_RS05700 sigK 1100612..1101340 (-) 729 WP_003237137.1 RNA polymerase sporulation sigma factor SigK -
  QN218_RS05705 nucA/comI 1101535..1101945 (+) 411 WP_003237136.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QN218_RS05710 - 1101978..1102700 (-) 723 WP_080429113.1 hypothetical protein -
  QN218_RS05715 gnd 1103014..1103907 (+) 894 WP_060399067.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  QN218_RS05720 - 1103926..1104552 (-) 627 WP_060399066.1 TVP38/TMEM64 family protein -
  QN218_RS05725 - 1104747..1105499 (+) 753 WP_060399065.1 N-acetylmuramoyl-L-alanine amidase -
  QN218_RS05730 - 1105752..1106483 (+) 732 WP_060399064.1 SGNH/GDSL hydrolase family protein -
  QN218_RS05735 - 1106559..1106690 (+) 132 WP_019258943.1 hypothetical protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14992.02 Da        Isoelectric Point: 5.7516

>NTDB_id=838542 QN218_RS05705 WP_003237136.1 1101535..1101945(+) (nucA/comI) [Bacillus inaquosorum strain BSY82]
MKKWMAGLLLAAAVFLCLVVPQPIKSASLYDKVLYFPLSRYPETGDHIRDAIAEGHSDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSGYPDGTRVRFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=838542 QN218_RS05705 WP_003237136.1 1101535..1101945(+) (nucA/comI) [Bacillus inaquosorum strain BSY82]
ATGAAAAAATGGATGGCAGGCCTGCTTCTTGCTGCAGCAGTTTTTCTTTGTTTAGTGGTTCCGCAGCCGATCAAGAGCGC
TTCTTTGTATGACAAAGTGTTGTATTTTCCGCTGTCTCGTTATCCGGAAACAGGGGATCATATTAGAGATGCGATAGCAG
AGGGGCATTCTGATATTTGTACCATCGACAGGGATGGAGCGGACAAAAGGCGAGAGGAATCATTAAAAGGAATTCCGACG
AAGCCGGGCTATGACCGGGATGAGTGGCCAATGGCGGTTTGCGAGGAAGGCGGCGCAGGAGCTGACGTCCGATATGTGAC
GCCTTCTGATAATCGCGGGGCCGGCTCGTGGGTAGGGAATCAAATGAGTGGTTATCCTGACGGCACCAGAGTGCGGTTTA
TTGTGCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.609

84.559

0.529