Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QN218_RS04365 Genome accession   NZ_CP126534
Coordinates   870733..871479 (+) Length   248 a.a.
NCBI ID   WP_060399205.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain BSY82     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 865733..876479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN218_RS04350 - 865958..866149 (-) 192 WP_003222590.1 hypothetical protein -
  QN218_RS04355 valS 866597..869239 (+) 2643 WP_060399207.1 valine--tRNA ligase -
  QN218_RS04360 - 869299..870591 (+) 1293 WP_060399206.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  QN218_RS04365 comC 870733..871479 (+) 747 WP_060399205.1 A24 family peptidase Machinery gene
  QN218_RS04370 - 871613..872611 (+) 999 WP_060399204.1 SPOR domain-containing protein -
  QN218_RS04375 - 872763..873332 (+) 570 WP_003237578.1 Maf family nucleotide pyrophosphatase -
  QN218_RS04380 radC 873369..873776 (+) 408 Protein_847 DNA repair protein RadC -
  QN218_RS04385 - 873789..875207 (-) 1419 WP_060400046.1 recombinase family protein -
  QN218_RS04390 - 875256..875702 (-) 447 WP_060399203.1 ImmA/IrrE family metallo-endopeptidase -
  QN218_RS04395 - 875716..876150 (-) 435 WP_060399202.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26483.04 Da        Isoelectric Point: 9.7945

>NTDB_id=838538 QN218_RS04365 WP_060399205.1 870733..871479(+) (comC) [Bacillus inaquosorum strain BSY82]
MLPILFILGFILGSFYYTAGCRIPLHISFITPRSACSFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPVAELVTA
CLFAAAGIRFGPSPELFPALVFISLLIIVAVTDIHFMLIPNRILIFFVPVLAAARLISPLDSWYAGLLGAAAGFLFLALI
AAITHGGIGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRHAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=838538 QN218_RS04365 WP_060399205.1 870733..871479(+) (comC) [Bacillus inaquosorum strain BSY82]
ATGCTTCCCATTCTCTTTATCCTCGGGTTTATCCTTGGTTCATTTTATTATACGGCCGGGTGCCGTATCCCCTTACATAT
ATCCTTTATCACGCCCCGTTCGGCATGCTCGTTTTGCCGGCGGACTTTAACCCCGGCAGAATTAATCCCCATCCTGTCAT
TCCTTTTCCAAAAAGGCAAATGTAAAAGCTGCGGGCACAGAATTTCTTTTATGTATCCTGTGGCAGAGCTTGTGACAGCG
TGTTTATTTGCGGCAGCAGGAATACGCTTTGGCCCGTCTCCGGAACTGTTTCCCGCTCTCGTGTTTATCTCTCTTCTCAT
CATCGTTGCAGTGACAGATATTCATTTTATGCTGATACCAAATCGGATATTAATTTTCTTTGTTCCCGTTCTAGCCGCTG
CAAGATTGATTTCTCCGCTTGATTCCTGGTATGCCGGCCTGTTAGGTGCGGCCGCCGGATTTCTATTCCTGGCCTTAATT
GCCGCAATCACCCATGGGGGAATAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTACTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTGTATGGAGCGGCAGCTGTCCTGACTGGAAGACACGCCA
AAAGACAGCCGCTTCCCTTTGCCCCCGCAATTGCTGCAGGGAGCATTTTAGCTTATTTATACGGTGACTCTATCATATCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(100-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

93.145

100

0.931