Detailed information NTG0838521

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: QPL78_RS18995
• Genome accession: NZ_CP126530
• Coordinates: 3699759..3700904 (+)
• Length: 381 a.a.
• NCBI ID: WP_284559893.1
• Uniprot ID: -
• Organism: Bacillus halotolerans strain Tehuacan_S4
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3694759..3705904

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QPL78_RS18975 (QPL78_18975)	-	3695627..3696904 (+)	1278	WP_284559890.1	pitrilysin family protein	-
QPL78_RS18980 (QPL78_18980)	-	3696901..3697602 (+)	702	WP_284559891.1	bacteriocin biosynthesis protein AlbG	-
QPL78_RS18985 (QPL78_18985)	-	3697609..3697985 (-)	377	Protein_3678	YncE family protein	-
QPL78_RS18990 (QPL78_18990)	-	3698178..3699530 (-)	1353	WP_284559892.1	YncE family protein	-
QPL78_RS18995 (QPL78_18995)	rapF	3699759..3700904 (+)	1146	WP_284559893.1	aspartate phosphatase	Regulator
QPL78_RS19000 (QPL78_19000)	-	3700888..3701007 (+)	120	WP_024123223.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
QPL78_RS19005 (QPL78_19005)	speB	3701113..3701985 (-)	873	WP_095712788.1	agmatinase	-
QPL78_RS19010 (QPL78_19010)	speE	3702046..3702876 (-)	831	WP_284559894.1	spermidine synthase	-
QPL78_RS19015 (QPL78_19015)	-	3703077..3705152 (+)	2076	WP_284559895.1	transglycosylase domain-containing protein	-
QPL78_RS19020 (QPL78_19020)	-	3705185..3705607 (-)	423	WP_284559896.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45574.12 Da
• Isoelectric Point: 4.8579

>NTDB_id=838521 QPL78_RS18995 WP_284559893.1 3699759..3700904(+) (rapF) [Bacillus halotolerans strain Tehuacan_S4]
MTSAISSSSVGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLENMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDRREYILAIQFFKKAESKLTFVKDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYNEQTTYDIRMIQCQSLFGANFLDLKQYDKAIAHFQKAYTLAEAAQQPQLMGRTLYNIALCKQNQHSLES
AIEYVKKSIHVFEESKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGREYSIAAGDTVYLMEFEFLESLYLSGPDEEAI
EKCFVFLESKMMYADIEDFALDVAKYYHQQENYKKASTYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1146 bp

>NTDB_id=838521 QPL78_RS18995 WP_284559893.1 3699759..3700904(+) (rapF) [Bacillus halotolerans strain Tehuacan_S4]
GTGACAAGTGCAATATCTTCTTCTTCCGTTGGAGAAAAGATTAATGAATGGTATATGTACATACGCCGATTCAGCATACC
GGATGCGGAATATTTACGAAGAGAAATCAAACAAGAGCTGGATCAAATGGAAGAAGACCAGGATCTTCATTTGTATTATT
CACTGATGGAATTCCGGCACAATCTGATGCTTGAGTATCTTGAACCGTTAGAAAACATGCGGATAGAGGAACAGCCGCGA
CTGTCCGATTTGCTGCTTGAAATCGATAAAAAACAGGCTCGTTTAACCGGACTGCTTGAATACTACTTTAATTTCTTCAG
AGGTATGTACGAACTGGACCGCCGGGAATATATATTAGCCATTCAATTTTTTAAAAAAGCAGAGAGCAAACTGACTTTTG
TTAAAGATAAAATTGATAAAGCTGAGTTCTTTTTCAAAATGTCAGAAGTTTATTACTATATGAAGCAAACTTATGTGTCC
ATGGACTATGCACGTCAAGCCTTTGAAATATACAATGAACAAACTACATATGATATCAGAATGATTCAATGTCAATCCCT
GTTTGGAGCTAACTTTTTGGATCTGAAACAGTATGATAAAGCAATTGCTCATTTCCAAAAAGCTTATACACTTGCTGAGG
CGGCACAGCAGCCGCAGCTAATGGGAAGGACGCTTTATAATATTGCACTTTGCAAGCAAAACCAACACAGTCTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCATGTATTTGAAGAATCGAAAATGCTTCCTTCACTGCCACAAGCTTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCTTGTGAATATCATAAAAAAGGAAGAGAATATTCAATAG
CTGCCGGAGACACTGTGTACTTAATGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCTGATGAAGAGGCAATA
GAAAAATGTTTTGTTTTCCTTGAAAGTAAAATGATGTATGCTGATATTGAAGACTTTGCACTCGATGTTGCTAAGTATTA
TCATCAGCAGGAAAATTACAAAAAAGCATCTACTTATTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_8) (193-213)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	79.79	100	0.798
rapC	Bacillus subtilis subsp. subtilis str. 168	56.842	99.738	0.567