Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QPL78_RS14000 Genome accession   NZ_CP126530
Coordinates   2706491..2707237 (-) Length   248 a.a.
NCBI ID   WP_284559451.1    Uniprot ID   -
Organism   Bacillus halotolerans strain Tehuacan_S4     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2701491..2712237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL78_RS13975 (QPL78_13975) mreC 2701899..2702771 (-) 873 WP_024122356.1 rod shape-determining protein MreC -
  QPL78_RS13980 (QPL78_13980) mreB 2702802..2703815 (-) 1014 WP_010335164.1 cell shape-determining protein MreB -
  QPL78_RS13985 (QPL78_13985) radC 2703907..2704602 (-) 696 WP_024122357.1 DNA repair protein RadC -
  QPL78_RS13990 (QPL78_13990) - 2704640..2705209 (-) 570 WP_284559450.1 Maf family nucleotide pyrophosphatase -
  QPL78_RS13995 (QPL78_13995) - 2705360..2706358 (-) 999 WP_105953484.1 SPOR domain-containing protein -
  QPL78_RS14000 (QPL78_14000) comC 2706491..2707237 (-) 747 WP_284559451.1 A24 family peptidase Machinery gene
  QPL78_RS14005 (QPL78_14005) - 2707378..2708670 (-) 1293 WP_284559453.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  QPL78_RS14010 (QPL78_14010) valS 2708730..2711372 (-) 2643 WP_284560782.1 valine--tRNA ligase -
  QPL78_RS14015 (QPL78_14015) - 2711821..2712012 (+) 192 WP_024122364.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26573.08 Da        Isoelectric Point: 9.7865

>NTDB_id=838504 QPL78_RS14000 WP_284559451.1 2706491..2707237(-) (comC) [Bacillus halotolerans strain Tehuacan_S4]
MIPILFVLGLILGSFYYTVGCRIPLHISIISPRSACSFCRRTLTPTELIPVLSFILQKGNCKSCGQKLSLMYPAAELSTA
SLFAAAGFRFGLSWELIVALVFLSLLIIVSVTDIHFMLIPNRILLFFLPFLAAGRIISPLLSWYESFIGAAAGFLLLAFI
AVITHGGIGGGDVKLFAVIGLVLGVKMLAAAFFFSVFIGALYGAAAVLFGRLARKQPIPFAPAIAAGSIFAYLYGDSIIS
FYVKTALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=838504 QPL78_RS14000 WP_284559451.1 2706491..2707237(-) (comC) [Bacillus halotolerans strain Tehuacan_S4]
ATGATTCCGATTCTTTTTGTCCTCGGCCTTATCCTCGGTTCATTTTATTATACGGTTGGATGCCGTATCCCCTTGCACAT
ATCCATCATAAGTCCGCGTTCGGCATGTTCCTTTTGCCGTCGAACCCTAACCCCGACGGAATTAATCCCTGTTTTATCTT
TTATTCTGCAAAAAGGCAATTGCAAAAGCTGCGGCCAAAAGCTCTCTCTTATGTACCCGGCGGCAGAGCTCTCGACAGCG
AGTTTATTTGCAGCCGCGGGATTTCGTTTCGGTTTGTCTTGGGAACTGATTGTTGCGTTGGTGTTTCTATCTCTTCTAAT
TATTGTTTCTGTGACAGATATTCACTTTATGCTGATTCCAAATCGCATATTGCTATTCTTTCTTCCCTTTCTGGCGGCTG
GCAGAATCATTTCTCCGCTTCTTTCTTGGTATGAAAGCTTTATAGGCGCGGCTGCCGGTTTTCTTTTACTGGCCTTTATT
GCCGTCATCACTCATGGAGGAATAGGGGGAGGGGATGTTAAATTATTTGCCGTTATCGGCCTTGTGCTTGGTGTAAAAAT
GCTTGCTGCCGCCTTTTTCTTTTCAGTTTTTATAGGCGCATTGTACGGAGCTGCCGCTGTACTGTTCGGAAGGCTGGCCA
GAAAACAGCCGATTCCCTTTGCCCCGGCAATTGCGGCTGGAAGTATTTTCGCTTATTTATACGGTGACTCTATCATTTCC
TTTTATGTCAAAACGGCGTTAGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-89)

Type IV leader peptidase family (Peptidase_A24)

(100-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

79.839

100

0.798