Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QPL78_RS13015 Genome accession   NZ_CP126530
Coordinates   2530805..2531572 (-) Length   255 a.a.
NCBI ID   WP_024122086.1    Uniprot ID   A0A9Q4HQQ6
Organism   Bacillus halotolerans strain Tehuacan_S4     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2525805..2536572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL78_RS12995 (QPL78_12995) - 2525979..2526791 (-) 813 WP_003237056.1 pyruvate, water dikinase regulatory protein -
  QPL78_RS13000 (QPL78_13000) ccpN 2526817..2527455 (-) 639 WP_284559310.1 transcriptional regulator CcpN -
  QPL78_RS13005 (QPL78_13005) glyS 2527589..2529628 (-) 2040 WP_284559312.1 glycine--tRNA ligase subunit beta -
  QPL78_RS13010 (QPL78_13010) glyQ 2529621..2530508 (-) 888 WP_010334976.1 glycine--tRNA ligase subunit alpha -
  QPL78_RS13015 (QPL78_13015) recO 2530805..2531572 (-) 768 WP_024122086.1 DNA repair protein RecO Machinery gene
  QPL78_RS13020 (QPL78_13020) - 2531609..2531752 (-) 144 WP_024122087.1 YqzL family protein -
  QPL78_RS13025 (QPL78_13025) era 2531896..2532801 (-) 906 WP_101864543.1 GTPase Era -
  QPL78_RS13030 (QPL78_13030) cdd 2532782..2533192 (-) 411 WP_024122088.1 cytidine deaminase -
  QPL78_RS13035 (QPL78_13035) - 2533306..2533683 (-) 378 WP_101864544.1 diacylglycerol kinase family protein -
  QPL78_RS13040 (QPL78_13040) ybeY 2533664..2534137 (-) 474 WP_010334982.1 rRNA maturation RNase YbeY -
  QPL78_RS13045 (QPL78_13045) pgpH 2534138..2536273 (-) 2136 WP_081638339.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29333.03 Da        Isoelectric Point: 8.3105

>NTDB_id=838496 QPL78_RS13015 WP_024122086.1 2530805..2531572(-) (recO) [Bacillus halotolerans strain Tehuacan_S4]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFEFILESFKQLDEGTDPDVITFIVQMKMLAVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFDKDPYKVPIKPQTARLLRLFYYFDLSRIGNVSLKQETKNELKQVIDLYYEEYSGVYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=838496 QPL78_RS13015 WP_024122086.1 2530805..2531572(-) (recO) [Bacillus halotolerans strain Tehuacan_S4]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGTACCAATGATTACGGAGAGACGAATAAAATTGTTACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCCAGAGGAGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTCTTAATGCAGAAAACAACAGGCCTCGGAACCCTTCAGCAGGGTGAAATGATCCTCAGCATGAGAGGC
ATCAGAGAGGATTTGTTTTTAACTGCATATGCAGCTTTTATTGCTGAGCTCGTTGACAAAGGCACAGAAGAAAAAAAACC
AAATCCCTATTTGTTTGAATTTATTTTAGAATCCTTTAAACAGCTTGACGAAGGAACAGACCCGGATGTTATTACCTTCA
TTGTTCAAATGAAGATGCTTGCTGTGATGGGACTGTATCCTGAGCTTAATCACTGTGTGCATTGTAAAAGCCAGGATGGG
ACATTCCATTTTTCTGTTCGCGATAACGGTTTTATTTGCCACCGCTGCTTTGACAAAGACCCTTACAAGGTGCCGATTAA
ACCGCAAACGGCAAGGCTTTTGAGACTGTTTTATTACTTCGATCTTTCAAGGATTGGCAATGTGTCTTTAAAGCAGGAAA
CGAAAAATGAATTAAAGCAAGTTATTGACTTGTACTACGAAGAATATTCAGGGGTTTATCTGAAATCGAAGCGTTTTTTA
GATCAAATGGAGAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

94.51

100

0.945