Detailed information NTG0838483

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: QPL78_RS10700
• Genome accession: NZ_CP126530
• Coordinates: 2127482..2128612 (+)
• Length: 376 a.a.
• NCBI ID: WP_284559102.1
• Uniprot ID: -
• Organism: Bacillus halotolerans strain Tehuacan_S4
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2122482..2133612

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QPL78_RS10660 (QPL78_10660)	-	2123110..2123853 (-)	744	WP_257987994.1	alpha/beta hydrolase	-
QPL78_RS10665 (QPL78_10665)	-	2124295..2124525 (+)	231	WP_105955051.1	hypothetical protein	-
QPL78_RS10670 (QPL78_10670)	-	2124533..2124847 (-)	315	Protein_2047	UPF0715 family protein	-
QPL78_RS10675 (QPL78_10675)	-	2125170..2125315 (-)	146	Protein_2048	helix-turn-helix domain-containing protein	-
QPL78_RS10680 (QPL78_10680)	-	2126125..2126385 (-)	261	WP_284559101.1	hypothetical protein	-
QPL78_RS10685 (QPL78_10685)	-	2126731..2126991 (+)	261	WP_082687961.1	hypothetical protein	-
QPL78_RS10695 (QPL78_10695)	-	2127239..2127403 (+)	165	WP_233403512.1	hypothetical protein	-
QPL78_RS10700 (QPL78_10700)	rapC	2127482..2128612 (+)	1131	WP_284559102.1	tetratricopeptide repeat protein	Regulator
QPL78_RS10705 (QPL78_10705)	-	2128602..2128745 (+)	144	WP_162264507.1	hypothetical protein	-
QPL78_RS10710 (QPL78_10710)	-	2128785..2129124 (-)	340	Protein_2054	UV damage repair protein UvrX	-
QPL78_RS10715 (QPL78_10715)	ppsA	2129424..2132027 (-)	2604	WP_284559103.1	phosphoenolpyruvate synthase	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44389.09 Da
• Isoelectric Point: 5.6979

>NTDB_id=838483 QPL78_RS10700 WP_284559102.1 2127482..2128612(+) (rapC) [Bacillus halotolerans strain Tehuacan_S4]
MEQLIPSSTVGVKINEWYKYIRMFAVPDSEILKAEIEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYINAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIDQAVSLYQNDKSDLLPHTLFTLTQIYFKMKDIEKALILYKKGIERAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide

• Length: 1131 bp

>NTDB_id=838483 QPL78_RS10700 WP_284559102.1 2127482..2128612(+) (rapC) [Bacillus halotolerans strain Tehuacan_S4]
ATGGAGCAATTAATTCCGTCATCTACAGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATTCAGAGATATTGAAAGCAGAGATTGAAGAAGAAATAAAACATATGAAGGAAGACCAAGACTTATTGCTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTTGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGCCAAACAAAGCTTAAAGGTGTCCTGGAATACTACTGCAATTTCTTTAGAGGAAT
GTATGAATTTGATAAGAAGGATTATATAAATGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTTGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTTTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCCCATCTTCAGAGAGCCTTAAAAGACTCAAAAGCCATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGGAACTGTTATTATAAAATGAAAGAGTATGACAAAGCTGCT
GAATATATTGATCAAGCAGTCTCATTGTACCAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTGATTCTTTATAAAAAAGGAATCGAGAGAGCACAAGCCATAAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTTATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (221-290)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	50.532	100	0.505
rapF	Bacillus subtilis subsp. subtilis str. 168	44.855	100	0.452