Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QPL78_RS07935 Genome accession   NZ_CP126530
Coordinates   1522301..1522579 (+) Length   92 a.a.
NCBI ID   WP_024121253.1    Uniprot ID   A0A9Q4EGS6
Organism   Bacillus halotolerans strain Tehuacan_S4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1517301..1527579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL78_RS07915 (QPL78_07915) - 1518493..1519404 (+) 912 WP_284560587.1 ketopantoate reductase family protein -
  QPL78_RS07920 (QPL78_07920) - 1519432..1520664 (-) 1233 WP_044156760.1 aminopeptidase -
  QPL78_RS07925 (QPL78_07925) - 1520778..1520909 (-) 132 WP_024121251.1 protein YkpC -
  QPL78_RS07930 (QPL78_07930) mreBH 1521012..1522019 (-) 1008 WP_024121252.1 cell shape-determining protein MreBH -
  QPL78_RS07935 (QPL78_07935) abrB 1522301..1522579 (+) 279 WP_024121253.1 transcriptional regulator AbhA Regulator
  QPL78_RS07940 (QPL78_07940) kinC 1522770..1524056 (+) 1287 WP_095714715.1 two-component sensor histidine kinase KinC -
  QPL78_RS07945 (QPL78_07945) - 1524072..1524902 (+) 831 WP_284560588.1 gamma-glutamylcyclotransferase -
  QPL78_RS07950 (QPL78_07950) ktrC 1524974..1525639 (+) 666 WP_010334094.1 Ktr system potassium transporter KtrC -
  QPL78_RS07955 (QPL78_07955) ade 1525796..1527529 (+) 1734 WP_284560589.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10284.12 Da        Isoelectric Point: 5.8872

>NTDB_id=838478 QPL78_RS07935 WP_024121253.1 1522301..1522579(+) (abrB) [Bacillus halotolerans strain Tehuacan_S4]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVEGDKIILKKYKPHGICLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=838478 QPL78_RS07935 WP_024121253.1 1522301..1522579(+) (abrB) [Bacillus halotolerans strain Tehuacan_S4]
ATGAAATCAATAGGTGTTGTAAGAAAAGTAGATGAATTAGGCCGTATTGTTATGCCGATAGAGTTAAGACGGGCACTGGA
TATTGCTATCAAAGACAGCATTGAGTTTTTTGTCGAGGGCGATAAAATTATTTTGAAAAAGTACAAACCTCATGGCATTT
GTTTAATGACTGGGGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGTTAAGCCCTGAAGGCGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.143

98.913

0.565