Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QPL78_RS05750 Genome accession   NZ_CP126530
Coordinates   1119977..1120555 (+) Length   192 a.a.
NCBI ID   WP_284560434.1    Uniprot ID   -
Organism   Bacillus halotolerans strain Tehuacan_S4     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1114977..1125555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL78_RS05730 (QPL78_05730) hemAT 1115484..1116782 (-) 1299 WP_044156512.1 heme-based aerotactic transducer HemAT -
  QPL78_RS05735 (QPL78_05735) - 1116923..1118452 (-) 1530 WP_284560432.1 FAD-dependent oxidoreductase -
  QPL78_RS05740 (QPL78_05740) - 1118564..1119421 (+) 858 WP_284560433.1 SDR family oxidoreductase -
  QPL78_RS05745 (QPL78_05745) - 1119450..1119683 (-) 234 WP_010333637.1 IDEAL domain-containing protein -
  QPL78_RS05750 (QPL78_05750) comK 1119977..1120555 (+) 579 WP_284560434.1 competence transcription factor ComK Regulator
  QPL78_RS05755 (QPL78_05755) - 1120714..1121133 (-) 420 WP_095713685.1 hypothetical protein -
  QPL78_RS05760 (QPL78_05760) - 1121322..1122221 (-) 900 WP_101863809.1 SDR family oxidoreductase -
  QPL78_RS05765 (QPL78_05765) - 1122424..1122693 (+) 270 WP_010333640.1 excalibur calcium-binding domain-containing protein -
  QPL78_RS05770 (QPL78_05770) - 1122734..1124203 (-) 1470 WP_101863810.1 sodium:solute symporter -
  QPL78_RS05775 (QPL78_05775) - 1124200..1124400 (-) 201 WP_198097513.1 DUF3311 domain-containing protein -
  QPL78_RS05780 (QPL78_05780) - 1124626..1124988 (-) 363 WP_284560435.1 hypothetical protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22458.80 Da        Isoelectric Point: 8.0255

>NTDB_id=838464 QPL78_RS05750 WP_284560434.1 1119977..1120555(+) (comK) [Bacillus halotolerans strain Tehuacan_S4]
MSQKTDAPLESYEVNSATIAVLPEEIDGKICSKIIEKDCMFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNRIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKTMELPVSCNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=838464 QPL78_RS05750 WP_284560434.1 1119977..1120555(+) (comK) [Bacillus halotolerans strain Tehuacan_S4]
ATGAGTCAGAAAACTGACGCACCATTAGAATCGTATGAAGTAAACAGCGCAACAATTGCCGTTTTGCCAGAAGAAATCGA
CGGCAAAATCTGTTCGAAAATCATTGAAAAAGACTGTATGTTTTACGTCAGCATGAAGCCGCTGCAAATTGTCGACCGAA
GCTGCCGATTTTTCGGATCAAGCTACGCGGGAAGAAAAGCGGGAACTTATGAAGTGACAAAAATTTCTCACAAACCGCCA
ATCATGGTGGACCCTTCGAACCGAATCTTTTTATTCCCTACACTTTCTTCGACTAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAACGGAAAAACGATGGAACTGC
CGGTCTCCTGCAATTCGTTCGAGAATCAGGTATACCGGACAGCATGGCTCAGAACCAAATTTCAGGACAGAATCGAACAC
CGTGTCCCGAAACGGCAGGAATTTATGCTGTATCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTTGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

95.833

100

0.958