Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   VB103_RS14540 Genome accession   NZ_CP141840
Coordinates   2928276..2928905 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain LA3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2923276..2933905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VB103_RS14525 (VB103_14525) helD 2923518..2925572 (-) 2055 WP_000420533.1 DNA helicase IV -
  VB103_RS14530 (VB103_14530) yccF 2925695..2926141 (+) 447 WP_001261231.1 YccF domain-containing protein -
  VB103_RS14535 (VB103_14535) yccS 2926151..2928313 (+) 2163 WP_000875020.1 YccS family putative transporter -
  VB103_RS14540 (VB103_14540) sxy/tfoX 2928276..2928905 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  VB103_RS14545 (VB103_14545) sulA 2929124..2929633 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  VB103_RS14550 (VB103_14550) ompA 2929990..2931030 (+) 1041 WP_000750416.1 porin OmpA -
  VB103_RS14555 (VB103_14555) matP 2931106..2931558 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  VB103_RS14560 (VB103_14560) ycbZ 2931744..2933504 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=838462 VB103_RS14540 WP_000839153.1 2928276..2928905(-) (sxy/tfoX) [Escherichia coli strain LA3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=838462 VB103_RS14540 WP_000839153.1 2928276..2928905(-) (sxy/tfoX) [Escherichia coli strain LA3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1