Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QPL78_RS02010 Genome accession   NZ_CP126530
Coordinates   378343..378780 (-) Length   145 a.a.
NCBI ID   WP_101863964.1    Uniprot ID   -
Organism   Bacillus halotolerans strain Tehuacan_S4     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 373343..383780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL78_RS01970 (QPL78_01970) - 373415..374176 (+) 762 WP_284560174.1 hypothetical protein -
  QPL78_RS01975 (QPL78_01975) - 374257..374328 (+) 72 Protein_345 RDD family protein -
  QPL78_RS01980 (QPL78_01980) - 374410..374745 (+) 336 WP_095714430.1 YckD family protein -
  QPL78_RS01985 (QPL78_01985) - 374882..375301 (+) 420 WP_024120173.1 MarR family transcriptional regulator -
  QPL78_RS01990 (QPL78_01990) - 375292..375618 (+) 327 WP_284560176.1 DUF3147 family protein -
  QPL78_RS01995 (QPL78_01995) - 375648..376376 (+) 729 WP_024120175.1 AAA family ATPase -
  QPL78_RS02000 (QPL78_02000) - 376449..377882 (+) 1434 WP_284560177.1 family 1 glycosylhydrolase -
  QPL78_RS02005 (QPL78_02005) nin/comJ 377918..378316 (-) 399 WP_095714428.1 competence protein ComJ Regulator
  QPL78_RS02010 (QPL78_02010) nucA/comI 378343..378780 (-) 438 WP_101863964.1 DNA-entry nuclease Machinery gene
  QPL78_RS02015 (QPL78_02015) tlpC 378966..380690 (-) 1725 WP_101863965.1 methyl-accepting chemotaxis protein TlpC -
  QPL78_RS02020 (QPL78_02020) hxlB 380803..381360 (-) 558 WP_101863966.1 6-phospho-3-hexuloisomerase -
  QPL78_RS02025 (QPL78_02025) hxlA 381366..381998 (-) 633 WP_284560178.1 3-hexulose-6-phosphate synthase -
  QPL78_RS02030 (QPL78_02030) hxlR 382230..382592 (+) 363 WP_003241118.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15957.68 Da        Isoelectric Point: 4.1966

>NTDB_id=838453 QPL78_RS02010 WP_101863964.1 378343..378780(-) (nucA/comI) [Bacillus halotolerans strain Tehuacan_S4]
MDIIKTLLLVIVVIAAAAVGLIKGDFFSDEQKTAQTEEYDETIAFPSERYPETANHIKDAISEGHSDVCTVDRDGAEERR
DQSLKDVPTKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=838453 QPL78_RS02010 WP_101863964.1 378343..378780(-) (nucA/comI) [Bacillus halotolerans strain Tehuacan_S4]
ATGGACATTATAAAAACTTTACTTCTCGTAATAGTCGTCATAGCAGCTGCAGCTGTTGGCCTGATTAAGGGAGACTTTTT
CTCAGACGAACAAAAAACGGCTCAAACAGAAGAATATGACGAAACAATAGCCTTCCCTTCTGAGCGGTATCCTGAGACAG
CAAATCATATCAAGGACGCAATAAGTGAGGGGCATTCAGATGTGTGCACTGTAGACAGAGACGGAGCTGAGGAACGCCGC
GACCAATCATTGAAAGACGTACCTACCAAAACAGGGTATGACCGAGATGAATGGCCAATGGCCATGTGCAAAGAAGGCGG
TGAAGGGGCTTCTGTAGAATATATTTCTCCCGCTGACAATCGCGGCGCAGGCTCCTGGGTCGGGCATCAGCTGACCGATT
ACCCTGACGGCACAAAGGTTTTATTTACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

88.889

99.31

0.883