Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   VB103_RS06060 Genome accession   NZ_CP141840
Coordinates   1202628..1203365 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain LA3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1197628..1208365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VB103_RS06030 (VB103_06030) yfiL 1197758..1198151 (-) 394 Protein_1178 DUF2799 domain-containing protein -
  VB103_RS06035 (VB103_06035) aroF 1198361..1199431 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  VB103_RS06040 (VB103_06040) tyrA 1199442..1200563 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  VB103_RS06045 (VB103_06045) pheA 1200606..1201766 (-) 1161 WP_072661174.1 bifunctional chorismate mutase/prephenate dehydratase -
  VB103_RS06050 (VB103_06050) pheL 1201865..1201912 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  VB103_RS06055 (VB103_06055) raiA 1202016..1202357 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  VB103_RS06060 (VB103_06060) comL 1202628..1203365 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  VB103_RS06065 (VB103_06065) rluD 1203500..1204480 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  VB103_RS06070 (VB103_06070) yfiH 1204477..1205208 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  VB103_RS06075 (VB103_06075) clpC 1205338..1207911 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=838440 VB103_RS06060 WP_000197686.1 1202628..1203365(-) (comL) [Escherichia coli strain LA3]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=838440 VB103_RS06060 WP_000197686.1 1202628..1203365(-) (comL) [Escherichia coli strain LA3]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGCGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376