Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   VDS57_RS18270 Genome accession   NZ_CP141839
Coordinates   3430733..3431182 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain PN1236     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3425733..3436182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS18230 (VDS57_18230) ctaE 3425749..3426372 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  VDS57_RS18235 (VDS57_18235) ctaF 3426375..3426707 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  VDS57_RS18240 (VDS57_18240) ctaG 3426735..3427628 (+) 894 WP_014479711.1 cytochrome c oxidase assembly factor CtaG -
  VDS57_RS18245 (VDS57_18245) ylbA 3427660..3428022 (-) 363 WP_014479712.1 YugN family protein -
  VDS57_RS18250 (VDS57_18250) ylbB 3428162..3428608 (+) 447 WP_003221362.1 CBS domain-containing protein -
  VDS57_RS18255 (VDS57_18255) ylbC 3428692..3429732 (+) 1041 WP_041335865.1 CAP domain-containing protein -
  VDS57_RS18260 (VDS57_18260) ylbD 3429964..3430362 (+) 399 WP_324271306.1 YlbD family protein -
  VDS57_RS18265 (VDS57_18265) ylbE 3430378..3430617 (+) 240 WP_003232231.1 YlbE-like family protein -
  VDS57_RS18270 (VDS57_18270) ylbF 3430733..3431182 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  VDS57_RS18275 (VDS57_18275) ylbG 3431237..3431509 (+) 273 WP_009967171.1 YlbG family protein -
  VDS57_RS18280 (VDS57_18280) rsmD 3431832..3432386 (+) 555 WP_017694816.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  VDS57_RS18285 (VDS57_18285) coaD 3432391..3432876 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  VDS57_RS18290 (VDS57_18290) spoVV 3432887..3434113 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  VDS57_RS18295 (VDS57_18295) ylbK 3434294..3435076 (+) 783 WP_003232221.1 patatin family protein -
  VDS57_RS18300 (VDS57_18300) sepM 3435078..3436103 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=838393 VDS57_RS18270 WP_003221370.1 3430733..3431182(+) (ylbF) [Bacillus subtilis strain PN1236]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=838393 VDS57_RS18270 WP_003221370.1 3430733..3431182(+) (ylbF) [Bacillus subtilis strain PN1236]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAATTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTCGAGATTGGGACAGCTGTCTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1