Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   VDS57_RS15590 Genome accession   NZ_CP141839
Coordinates   2927533..2928276 (+) Length   247 a.a.
NCBI ID   WP_003233230.1    Uniprot ID   G4NRP4
Organism   Bacillus subtilis strain PN1236     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2922533..2933276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS15560 (VDS57_15560) - 2922914..2923105 (+) 192 WP_003233238.1 hypothetical protein -
  VDS57_RS15565 (VDS57_15565) trpP 2923178..2923696 (-) 519 WP_003233236.1 tryptophan transporter TrpP -
  VDS57_RS15570 (VDS57_15570) serC 2923821..2924900 (-) 1080 WP_014479338.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  VDS57_RS15575 (VDS57_15575) - 2924954..2925142 (-) 189 WP_324271339.1 hypothetical protein -
  VDS57_RS15580 (VDS57_15580) - 2925147..2926499 (-) 1353 WP_014478984.1 IS1182 family transposase -
  VDS57_RS15585 (VDS57_15585) hinT 2926608..2927045 (-) 438 WP_003233231.1 HIT family protein -
  VDS57_RS15590 (VDS57_15590) pptA 2927533..2928276 (+) 744 WP_003233230.1 ABC transporter ATP-binding protein EcsA Regulator
  VDS57_RS15595 (VDS57_15595) ecsB 2928269..2929495 (+) 1227 WP_324271338.1 ABC transporter permease EcsB -
  VDS57_RS15600 (VDS57_15600) ecsC 2929515..2930225 (+) 711 WP_046160232.1 EcsC family protein -
  VDS57_RS15605 (VDS57_15605) sndC 2930243..2931433 (-) 1191 WP_069837400.1 N-acetyl amino acid acetylase SndC -
  VDS57_RS15610 (VDS57_15610) - 2931506..2932897 (-) 1392 WP_080478402.1 hypothetical protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27722.20 Da        Isoelectric Point: 5.9114

>NTDB_id=838366 VDS57_RS15590 WP_003233230.1 2927533..2928276(+) (pptA) [Bacillus subtilis strain PN1236]
MSLLSVKDLTGGYTRNPVLKNVSFTLEPNQIVGLIGLNGAGKSTTIRHIIGLMDPHKGSIELNGKTFAEDPEGYRSQFTY
IPETPVLYEELTLMEHLELTAMAYGLSKETMEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPALYIIDE
PFLGLDPLAINALLERMNEAKKGGASVLMSTHILATAERYCDSFIILHNGEVRARGTLSELREQFGMKDAALDDLYLELT
KEDAGHE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=838366 VDS57_RS15590 WP_003233230.1 2927533..2928276(+) (pptA) [Bacillus subtilis strain PN1236]
ATGTCTCTGCTATCGGTAAAAGACTTGACCGGCGGATATACAAGGAATCCGGTTTTAAAAAACGTATCATTCACCCTTGA
ACCGAATCAAATTGTCGGATTAATCGGGCTGAATGGTGCTGGTAAAAGTACAACAATCAGACACATCATCGGGCTGATGG
ACCCGCATAAAGGTTCAATCGAATTAAACGGTAAAACGTTTGCTGAGGATCCGGAAGGCTACCGTTCACAATTTACCTAT
ATACCTGAAACACCTGTTTTATACGAAGAATTGACGCTGATGGAGCATCTTGAACTAACAGCCATGGCATATGGACTGTC
AAAAGAAACGATGGAGAAAAGGCTGCCTCCGCTACTAAAGGAATTCCGAATGGAAAAGAGGCTGAAGTGGTTCCCGGCCC
ATTTTTCTAAAGGAATGAAGCAGAAGGTTATGATTATGTGCGCATTTTTGGCAGAGCCTGCGCTCTACATTATTGATGAG
CCTTTTCTAGGGCTTGATCCGCTTGCCATTAACGCGCTGCTTGAACGGATGAATGAAGCGAAAAAAGGCGGGGCGAGCGT
GCTGATGTCAACACACATTTTGGCAACGGCAGAACGCTATTGTGATTCGTTTATTATTTTACATAACGGCGAGGTGCGGG
CGCGCGGCACGCTGTCAGAGCTCAGAGAGCAGTTTGGAATGAAGGACGCGGCGCTGGACGATTTGTATCTTGAGCTTACA
AAGGAAGACGCTGGCCATGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NRP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

56.904

96.761

0.551
  pptA Streptococcus thermophilus LMD-9

56.485

96.761

0.547