Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QPL83_RS08305 Genome accession   NZ_CP126524
Coordinates   1271355..1271678 (-) Length   107 a.a.
NCBI ID   WP_000578871.1    Uniprot ID   A0AAJ1P116
Organism   Bacillus toyonensis strain Monterrey_S3     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1266355..1276678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL83_RS08280 (QPL83_08280) - 1266586..1267872 (+) 1287 WP_000247036.1 D-alanyl-D-alanine carboxypeptidase family protein -
  QPL83_RS08285 (QPL83_08285) - 1268067..1268636 (+) 570 WP_000767788.1 signal peptidase I -
  QPL83_RS08290 (QPL83_08290) - 1268699..1269286 (+) 588 WP_000172853.1 CalY family protein -
  QPL83_RS08295 (QPL83_08295) - 1269422..1270258 (+) 837 WP_151577730.1 DUF4047 domain-containing protein -
  QPL83_RS08300 (QPL83_08300) calY 1270686..1271279 (+) 594 WP_000053720.1 biofilm matrix protein CalY -
  QPL83_RS08305 (QPL83_08305) sinR 1271355..1271678 (-) 324 WP_000578871.1 helix-turn-helix domain-containing protein Regulator
  QPL83_RS08310 (QPL83_08310) - 1271758..1271892 (-) 135 WP_000276222.1 anti-repressor SinI family protein -
  QPL83_RS08315 (QPL83_08315) inhA1 1272238..1274625 (+) 2388 WP_001035956.1 M6 family metalloprotease immune inhibitor InhA1 -
  QPL83_RS08320 (QPL83_08320) - 1274783..1276150 (+) 1368 WP_000028364.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12370.21 Da        Isoelectric Point: 8.5614

>NTDB_id=838366 QPL83_RS08305 WP_000578871.1 1271355..1271678(-) (sinR) [Bacillus toyonensis strain Monterrey_S3]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETEKEAHLDSEWTQLV
KDAMNSGVSKEQFREFLEFTQWKKNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=838366 QPL83_RS08305 WP_000578871.1 1271355..1271678(-) (sinR) [Bacillus toyonensis strain Monterrey_S3]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGACGAAACAGAAAAGGAAGCTCACCTAGACTCCGAATGGACACAGCTCGTT
AAAGACGCAATGAACTCTGGTGTCTCTAAAGAACAGTTTCGTGAATTTCTTGAATTTACACAGTGGAAGAAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

68.807

100

0.701